View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_17 (Length: 479)
Name: NF8521A_low_17
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 2 - 479
Target Start/End: Complemental strand, 39392958 - 39392482
Alignment:
| Q |
2 |
ctataaagaaccaaaatggaaagaaaaaagttgaatactacttaaaaatgaaacggtccaaatgctcttagaaattattgttgtttattttaagttgcca |
101 |
Q |
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| T |
39392958 |
ctataaagaaccaaaatggaaagaaaaaagttgaatactacttaaaaatgaaatggtccaaatgttcttagaaattattgttgtttatttgaagttgcca |
39392859 |
T |
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| Q |
102 |
ttggcacaaaagtgaaatctaaaagtaatatataactaagccattaataaatactaatgnnnnnnnnnctccttcaggagaggtatatgtgtgtgggatg |
201 |
Q |
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| T |
39392858 |
ttggcacaaaagtgaaatctaaaagtaatatataactaagccattaataaatactaatgtttttttt-ctccttcaggagaggtatatgtgtgtgggatg |
39392760 |
T |
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| Q |
202 |
tcaaaggaggaagaggtacctgatgatccagaggagataaggggtaacgaagaatcaattgcgatgctgaagagggtagctaagaccgtatcaagccatc |
301 |
Q |
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| T |
39392759 |
tcaaaggaggaagaggtacctgatgatccagaggagataaggggtaacgaagaatcaattgcgatgctgaagagggtagctaagaccgtatcaagccatc |
39392660 |
T |
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| Q |
302 |
tcggggaagaaggagtgaaggtggagcaagcgtgctttttgccgtgtaccgatgatggcgtgccgattataggagaggttcctggtgtgaaaggttgcta |
401 |
Q |
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| T |
39392659 |
tcggggaagaaggagtgaaggtggagcaagcgtgctttttgccatgtaccgatgatggcgtgccgattataggagaggttcctggtgtgaaaggttgcta |
39392560 |
T |
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| Q |
402 |
tgtagcgacaggacatagttgctggggtattctcaatggccctgccactggagctgctgttgctgagcttgtacttga |
479 |
Q |
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| T |
39392559 |
tgtagcgacaggacatagttgctggggtattctcaatggccctgccactggagctgctgttgctgagcttgtacttga |
39392482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 205 - 450
Target Start/End: Complemental strand, 30754401 - 30754159
Alignment:
| Q |
205 |
aaggaggaagaggtacctgatgatccagaggagataaggggtaacgaagaatcaattgcgatgctgaagagggtagctaagaccgtatcaagccatctcg |
304 |
Q |
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| T |
30754401 |
aaggaggaagaggtacctgatgatccagaggagataaggggtaacagtgaatcaattgcgatgctgaaaagggtagctaagaccgtatcaagccatctcg |
30754302 |
T |
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| Q |
305 |
gggaagaaggagtgaaggtggagcaagcgtgctttttgccgtgtaccgatgatggcgtgccgattataggagaggttcctggtgtgaaaggttgctatgt |
404 |
Q |
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| T |
30754301 |
gggaag---gagtgaaggtggagcaagcgtgctttttgccgtgcacagatgatggcgtgccgattataggagagattcctggggtgaaaggctgttatgt |
30754205 |
T |
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| Q |
405 |
agcgacaggacatagttgctggggtattctcaatggccctgccact |
450 |
Q |
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| T |
30754204 |
agcgacgggacatagttgctggggtattctcaatggtcctgccact |
30754159 |
T |
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