View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_173 (Length: 265)
Name: NF8521A_low_173
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_173 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 23340907 - 23341170
Alignment:
| Q |
9 |
tggtgttcagaaagtttcgaaccacgctgcttgaacatatgcaggtatagtgtgagccaggtgaatagataaagtggaagttcgacctgatcgagaaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23340907 |
tggtgttcagaaagtttcgaaccacgctgcttgaacatatgcaggtatagtgtgagccaggtgaatagaaaaagtggaagttcgacctgatcgagaaaaa |
23341006 |
T |
|
| Q |
109 |
tgaagcataagtcaaacaaattagaacttaatcaaacaatcaacataattgaaaggaacaaattaacaatttttta------tgaaactgaacgattttc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||||| |
|
|
| T |
23341007 |
tgaagcataagtcaaacaaattagaacttaatctaacaatcaacataattgaaatgaacaaattaagatttttttatgaaagtgaaactgaacaattttc |
23341106 |
T |
|
| Q |
203 |
taactgctatatgagtcaatttcgaagactaaggttatcgaagaac-aaaaataaccatgacta |
265 |
Q |
| |
|
|| ||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23341107 |
tacctgctatatgagtcaattttgaagcctaaggttatagaagaacaaaaaataaccatgacta |
23341170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 22439822 - 22439902
Alignment:
| Q |
185 |
tgaaactgaacgattttctaactgctatatgagtcaatttcgaagactaaggttatcgaagaacaaaaataaccatgacta |
265 |
Q |
| |
|
||||||||||||| |||||| |||||||||| | ||||| ||||||||| |||| ||||| |||||| |||||||||| |
|
|
| T |
22439822 |
tgaaactgaacgaatttctacgcgctatatgagccgatttccaagactaagcttattgaagaccaaaaaacaccatgacta |
22439902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University