View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_176 (Length: 263)

Name: NF8521A_low_176
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_176
NF8521A_low_176
[»] chr3 (20 HSPs)
chr3 (47-245)||(41985651-41985852)
chr3 (49-245)||(41980877-41981073)
chr3 (166-245)||(9494822-9494901)
chr3 (152-245)||(9329859-9329952)
chr3 (152-248)||(9695616-9695712)
chr3 (47-245)||(9448337-9448535)
chr3 (152-245)||(9336563-9336656)
chr3 (152-245)||(9343868-9343961)
chr3 (152-242)||(9407392-9407482)
chr3 (155-245)||(9655360-9655450)
chr3 (155-245)||(9646367-9646457)
chr3 (152-227)||(9416614-9416689)
chr3 (155-242)||(9425599-9425686)
chr3 (152-242)||(9617463-9617553)
chr3 (160-224)||(9626488-9626552)
chr3 (152-200)||(9686751-9686799)
chr3 (167-245)||(9340694-9340772)
chr3 (146-224)||(9756424-9756502)
chr3 (152-242)||(9397811-9397903)
chr3 (152-225)||(9432939-9433012)
[»] chr8 (2 HSPs)
chr8 (47-212)||(13170579-13170744)
chr8 (47-235)||(44688680-44688868)
[»] chr1 (8 HSPs)
chr1 (47-245)||(18991227-18991422)
chr1 (175-231)||(8814385-8814441)
chr1 (170-231)||(235250-235311)
chr1 (170-231)||(251412-251473)
chr1 (157-241)||(4428658-4428742)
chr1 (177-231)||(246904-246958)
chr1 (175-231)||(231618-231674)
chr1 (201-245)||(4439883-4439927)
[»] chr2 (1 HSPs)
chr2 (155-245)||(20694304-20694394)
[»] chr6 (7 HSPs)
chr6 (152-248)||(7041516-7041612)
chr6 (170-232)||(7046875-7046937)
chr6 (170-231)||(7025793-7025854)
chr6 (170-231)||(7029850-7029911)
chr6 (170-231)||(9170854-9170915)
chr6 (172-231)||(9159515-9159574)
chr6 (170-231)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (152-227)||(450111-450186)
chr7 (165-227)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (166-219)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 41985852 - 41985651
Alignment:
Q  47 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 143  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  144 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  244 tt 245  Q
    ||    
T  41985652 tt 41985651  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 41981073 - 41980877
Alignment:
Q  49 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 148  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  149 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 9494822 - 9494901
Alignment:
Q  166 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgtt 9494901  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 9329952 - 9329859
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgtt 9329859  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 9695616 - 9695712
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttctc 248  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctc 9695712  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 9448535 - 9448337
Alignment:
Q  47 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 146  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  147 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    || | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 9336656 - 9336563
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 9336563  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 9343961 - 9343868
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgtt 9343868  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 9407482 - 9407392
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttc 242  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | ||||||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttc 9407392  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 9655360 - 9655450
Alignment:
Q  155 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | |||||||||||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgtt 9655450  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 9646367 - 9646457
Alignment:
Q  155 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | |||||||||||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgtt 9646457  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 9416689 - 9416614
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 227  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttctt 9416614  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 9425686 - 9425599
Alignment:
Q  155 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttc 242  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | ||||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttc 9425599  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 9617463 - 9617553
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttc 242  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | ||||||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttc 9617553  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 9626488 - 9626552
Alignment:
Q  160 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgtt 224  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| ||||||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgtt 9626552  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 200  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 9340772 - 9340694
Alignment:
Q  167 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  ||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgtt 9340694  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 9756502 - 9756424
Alignment:
Q  146 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgtt 224  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| ||||||||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtt 9756424  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 9397903 - 9397811
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttc 242  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | ||||||||||||    
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttc 9397811  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 9433012 - 9432939
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttc 225  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| |||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttc 9432939  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  47 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 146  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  147 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 44688680 - 44688868
Alignment:
Q  47 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 146  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  147 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatg 235  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| ||||||||||||||||||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatg 44688868  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 18991422 - 18991227
Alignment:
Q  47 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 146  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  147 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| |||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgtt 18991227  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 8814385 - 8814441
Alignment:
Q  175 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttgggg 8814441  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 235311 - 235250
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||    
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttgggg 235250  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 251412 - 251473
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||    
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttgggg 251473  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 4428742 - 4428658
Alignment:
Q  157 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgtt 241  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| ||||||||||||||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtt 4428658  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 246958 - 246904
Alignment:
Q  177 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttgggg 246904  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 231674 - 231618
Alignment:
Q  175 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttgggg 231618  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 4439927 - 4439883
Alignment:
Q  201 gagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgtt 4439883  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 20694304 - 20694394
Alignment:
Q  155 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 245  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| ||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 20694394  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 7041612 - 7041516
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttctc 248  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||||||    
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctc 7041516  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 7046937 - 7046875
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggga 232  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7025854 - 7025793
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  172 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7012918 - 7012857
Alignment:
Q  170 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 231  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 450111 - 450186
Alignment:
Q  152 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 227  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | ||||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 3695792 - 3695731
Alignment:
Q  165 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 227  Q
    |||| |||||||| ||||||| ||  ||||||||  |||||||||||||||||||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttctt 3695731  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 18571213 - 18571160
Alignment:
Q  166 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt 219  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagtt 18571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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