View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_196 (Length: 253)
Name: NF8521A_low_196
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_196 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 31077127 - 31077357
Alignment:
| Q |
15 |
atgaagaaaaatatggttcaaatctcaagtttattttacgttctgattatctttcgttttatctttcttgttgttaccaacagcggtatgtaattttttg |
114 |
Q |
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| T |
31077127 |
atgaagaaaaatatggttcaaatctcaagtttattttatgttctgatcatctttcgttttatctttcttgttaccaccaacagcggtatgtcatttt-tg |
31077225 |
T |
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| Q |
115 |
caccattttaaagtttcaattttatcttatacacaatatttcatcatgttttagtaaaacttgtttgttcttatttaacagcagtttccatcctttgcaa |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31077226 |
caccattttaaagtttgaattttatcttatacacaatatttcatcatgttttagtaaaacttgtttgttcttatttaacagcagtttccatcctttgcaa |
31077325 |
T |
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| Q |
215 |
aagaaactctcattgtccaaaatatatgtgct |
246 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31077326 |
aagaaactctcattgtccaaaatatatgtgct |
31077357 |
T |
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