View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_197 (Length: 253)
Name: NF8521A_low_197
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_197 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 5034125 - 5033894
Alignment:
| Q |
8 |
tggtgttatgaagagtattgttgacagtggctctgcctataaaactgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaacgagctaa |
107 |
Q |
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| T |
5034125 |
tggtgttatgaagagtattgttgacagtgactctgcctataaagctgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaactagctaa |
5034026 |
T |
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| Q |
108 |
aggagtgtttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagctacaact |
207 |
Q |
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| T |
5034025 |
aggagtatttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagctacaact |
5033926 |
T |
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| Q |
208 |
ccaagtctccaagtcacagccatcttaatgttgaaataag |
247 |
Q |
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| T |
5033925 |
cca--------agtcacagccatcttaatgttgaaataag |
5033894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 4974720 - 4974768
Alignment:
| Q |
98 |
aacgagctaaaggagtgtttggctgcagaattatcccgaaaaagggctg |
146 |
Q |
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| T |
4974720 |
aacgagctaaaggagtgtttggctgcagaattagcccgaaaaggggctg |
4974768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 4999673 - 4999720
Alignment:
| Q |
103 |
gctaaaggagtgtttggctgcagaattatcccgaaaaagggctggtcg |
150 |
Q |
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| T |
4999673 |
gctaaaggagtgtttggctgaagaattagcccgaaaaaaggttggtcg |
4999720 |
T |
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