View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_198 (Length: 251)
Name: NF8521A_low_198
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_198 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 38566857 - 38567087
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
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| Q |
221 |
gtcgactttccacttccactttgcccaacca |
251 |
Q |
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| T |
38567057 |
gtcgactttccacttccactttgtccaacca |
38567087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 38525732 - 38525962
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataact |
38525931 |
T |
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| Q |
221 |
gtcgactttccacttccactttgcccaacca |
251 |
Q |
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| T |
38525932 |
gtggactttccacttccactttgtccaacca |
38525962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 51199554 - 51199473
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgcccaacca |
251 |
Q |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctacca |
51199473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 51212687 - 51212624
Alignment:
| Q |
183 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgccc |
246 |
Q |
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| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttgccc |
51212624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 51145548 - 51145484
Alignment:
| Q |
187 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgcccaacca |
251 |
Q |
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| T |
51145548 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctacca |
51145484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 51156689 - 51156625
Alignment:
| Q |
187 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgcccaacca |
251 |
Q |
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|||||||||||||||||||| |||| | | || ||| || || ||||||||||||||||| |||| |
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| T |
51156689 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctacca |
51156625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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