View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_2 (Length: 790)
Name: NF8521A_low_2
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 219 - 693
Target Start/End: Original strand, 32955629 - 32956094
Alignment:
| Q |
219 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
318 |
Q |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
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| Q |
319 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
418 |
Q |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtcatcatcat---------------aacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
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| Q |
419 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgtatcatccatgaaacgtagctcattgccatacctttgact |
518 |
Q |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
32955913 |
T |
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| Q |
519 |
ctgtggttgtgagtaccatgaa------ttgttgttgttactgtagaagtttcctgactccattatgccgccgttagtcgcggctgtcgtggcaaccgcg |
612 |
Q |
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| T |
32955914 |
ctgtggttgtgagtaccatgaattgttgttgttgttgttactgtagaagtttcctgactccattatgccaccgttagtcgcagctgtcgtggcaaccgcg |
32956013 |
T |
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| Q |
613 |
gcgtttgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaaccattatt |
693 |
Q |
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| T |
32956014 |
gcgttcgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaaccattatt |
32956094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 32955502 - 32955564
Alignment:
| Q |
93 |
taattgaagttaagaacatgtatagaaatagaattatccaattctctttccatattcttaagc |
155 |
Q |
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| T |
32955502 |
taattgaagttaagaacatatatagaaatagaattatccaattctctttccatattcttaagc |
32955564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 676
Target Start/End: Complemental strand, 7723739 - 7723680
Alignment:
| Q |
617 |
ttgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatt |
676 |
Q |
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| T |
7723739 |
ttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaatt |
7723680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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