View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_202 (Length: 250)
Name: NF8521A_low_202
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_202 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 12210 - 11989
Alignment:
| Q |
7 |
tcgaagaatatcgtttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc |
106 |
Q |
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|||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12210 |
tcgaagaaaatcgtt-gacggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc |
12112 |
T |
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| Q |
107 |
caagacaatttatgaggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa |
206 |
Q |
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| T |
12111 |
caggacaatttatgaggcattccacttcaaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa |
12012 |
T |
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| Q |
207 |
ccaattcaatgtatgttatatct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
12011 |
ccaattcaatgtatgttatatct |
11989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 2171051 - 2171272
Alignment:
| Q |
7 |
tcgaagaatatcgtttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc |
106 |
Q |
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|||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2171051 |
tcgaagaaaatcgtt-gacggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc |
2171149 |
T |
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| Q |
107 |
caagacaatttatgaggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa |
206 |
Q |
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| T |
2171150 |
caggacaatttatgaggcattccacttcaaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa |
2171249 |
T |
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| Q |
207 |
ccaattcaatgtatgttatatct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
2171250 |
ccaattcaatgtatgttatatct |
2171272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2187567 - 2187347
Alignment:
| Q |
7 |
tcgaagaatatcgtttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc |
106 |
Q |
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|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||| ||| ||||||||||| |
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| T |
2187567 |
tcgaagaaaatcatttgatggattgcattctatgagatgaagaaattgaacatttgaatacaccgtggagctcggtatatcattttcacgagcattaatc |
2187468 |
T |
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| Q |
107 |
caagacaatttatgaggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa |
206 |
Q |
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|||||||| ||||||||| |||||||||||| |||| ||| |||||||||| | ||||||| |||| ||| ||||||||||||||||||| || |||| |
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| T |
2187467 |
caagacaaattatgaggctttccacttccaaatatttgtaaagtatggaccatggagagattttgaaaggaaaatggaaattgttctatggaagtaccaa |
2187368 |
T |
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| Q |
207 |
ccaattcaatgtatgttatat |
227 |
Q |
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||||||||||||||||||||| |
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| T |
2187367 |
ccaattcaatgtatgttatat |
2187347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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