View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_204 (Length: 250)
Name: NF8521A_low_204
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_204 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 10529006 - 10529237
Alignment:
| Q |
18 |
gacatcaactatcggaaaatgctgaatctcacgacagattttatagggaaagtatcgcgagcgtgtattttctgttnnnnnnnnnnnnctgttaaaattt |
117 |
Q |
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| T |
10529006 |
gacaccaactatcggaaaatgctgaatctcacgacagattttatagggaaagtatcacgagcgtgtattttctgtttctctctctc--ctgttaaaattt |
10529103 |
T |
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| Q |
118 |
ctctctcatccgtgtattgtgggaa-cccatcgttttaattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaatagcattgc |
216 |
Q |
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| T |
10529104 |
ctctctcatccgtgtattgtgggaaacccatcgttttaattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaatagcattgc |
10529203 |
T |
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| Q |
217 |
tgccaactatctcaagcaaatgtcatgttgggtg |
250 |
Q |
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| T |
10529204 |
tgccaactatctcaagcaaatgtcatgttgggtg |
10529237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 269589 - 269781
Alignment:
| Q |
31 |
ggaaaatgctgaatctcacgacagattttatagggaaagtatcgc-------gagcgtgtattttctgttnnnnnnnnnnnnctgttaaaatttctctct |
123 |
Q |
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| T |
269589 |
ggaaaatgctgaatctcacgacagattttatagtgaaagcatcgctactcgcgagcgtgtatttgctgtttctctctc----ctgttaaaatttctctct |
269684 |
T |
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| Q |
124 |
catccgtgtattgtgggaa-cccatcgtttt-aattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaatagcattgctg |
218 |
Q |
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| T |
269685 |
cttccgtgtattgtgggaaacccattgtttttaattggtcaattgcttgttcttgatgaattcgggacaaaatctttccctttaaatagcattgctg |
269781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 40926139 - 40926031
Alignment:
| Q |
109 |
ttaaaatttctctctcatccgtgtattgtgggaaccca-tcgttttaattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaa |
207 |
Q |
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| T |
40926139 |
ttaacatttctctctctttcgtgcattgtgcaaaaccaattgttttaattggtcaatcgcttgttcttgatgagtttggaac-aaatctttccctttaaa |
40926041 |
T |
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| Q |
208 |
tagcattgct |
217 |
Q |
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| T |
40926040 |
taacattgct |
40926031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 4481237 - 4481175
Alignment:
| Q |
150 |
ttttaattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaatagca |
212 |
Q |
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| T |
4481237 |
ttttaattggtcaatactttattcttgatgagttcgggacaatttctttccctttaaatagca |
4481175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 39295279 - 39295171
Alignment:
| Q |
109 |
ttaaaatttctctctcatccgtgtattgtgggaaccca-tcgttttaattggtcaattgcttgttcttaatgaattcgggacaaaatctttccctttaaa |
207 |
Q |
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| T |
39295279 |
ttaacatttctctctcttccgtgttttgtgcaaaaccaattgttttaattgttcaatctctttttcttgatgatttcgggacaatct-tttccctttaaa |
39295181 |
T |
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| Q |
208 |
tagcattgct |
217 |
Q |
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| T |
39295180 |
tagcattgct |
39295171 |
T |
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