View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_210 (Length: 250)

Name: NF8521A_low_210
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_210
NF8521A_low_210
[»] chr2 (8 HSPs)
chr2 (77-243)||(10524200-10524366)
chr2 (77-236)||(17116694-17116854)
chr2 (92-238)||(39338695-39338841)
chr2 (97-238)||(387280-387420)
chr2 (83-179)||(7874454-7874550)
chr2 (83-179)||(14106343-14106440)
chr2 (107-179)||(7460839-7460912)
chr2 (83-179)||(5254419-5254511)
[»] chr3 (16 HSPs)
chr3 (77-235)||(47235806-47235964)
chr3 (83-236)||(31482991-31483143)
chr3 (77-238)||(2392321-2392482)
chr3 (77-238)||(2394085-2394246)
chr3 (83-236)||(34475577-34475728)
chr3 (77-238)||(20611888-20612048)
chr3 (77-236)||(53248007-53248167)
chr3 (83-238)||(45163960-45164115)
chr3 (85-238)||(17551062-17551210)
chr3 (83-235)||(43012484-43012635)
chr3 (77-238)||(19176608-19176770)
chr3 (83-179)||(30352262-30352356)
chr3 (77-207)||(9583870-9583999)
chr3 (93-179)||(23328181-23328268)
chr3 (83-179)||(40023393-40023490)
chr3 (83-179)||(45398959-45399056)
[»] chr1 (15 HSPs)
chr1 (83-240)||(5459264-5459421)
chr1 (77-240)||(5389237-5389399)
chr1 (77-238)||(24449745-24449906)
chr1 (77-240)||(46692634-46692797)
chr1 (83-238)||(41920557-41920717)
chr1 (111-238)||(31585608-31585736)
chr1 (105-240)||(6764224-6764359)
chr1 (158-240)||(30685800-30685882)
chr1 (77-138)||(6804745-6804806)
chr1 (83-179)||(46814288-46814385)
chr1 (83-135)||(30685745-30685797)
chr1 (106-179)||(7857816-7857890)
chr1 (83-121)||(24684312-24684350)
chr1 (156-238)||(24684372-24684453)
chr1 (83-119)||(31584858-31584894)
[»] chr5 (6 HSPs)
chr5 (77-240)||(18593346-18593509)
chr5 (83-237)||(34378204-34378358)
chr5 (90-240)||(698464-698614)
chr5 (77-215)||(7161831-7161969)
chr5 (79-234)||(18313460-18313614)
chr5 (77-238)||(29087587-29087745)
[»] chr8 (17 HSPs)
chr8 (77-238)||(20138531-20138693)
chr8 (77-238)||(31207177-31207338)
chr8 (83-240)||(37986679-37986836)
chr8 (83-235)||(24995215-24995368)
chr8 (83-238)||(9519604-9519760)
chr8 (85-240)||(12898098-12898252)
chr8 (83-235)||(41893223-41893374)
chr8 (86-240)||(32066119-32066273)
chr8 (83-234)||(34388828-34388977)
chr8 (143-236)||(22773606-22773699)
chr8 (77-155)||(16457290-16457368)
chr8 (83-138)||(22773820-22773875)
chr8 (165-240)||(16457364-16457439)
chr8 (83-238)||(36630943-36631084)
chr8 (77-151)||(35821432-35821506)
chr8 (83-153)||(38577610-38577681)
chr8 (83-137)||(35816067-35816121)
[»] chr7 (16 HSPs)
chr7 (86-240)||(5860112-5860266)
chr7 (77-238)||(44353378-44353540)
chr7 (77-238)||(47325700-47325861)
chr7 (77-240)||(37795092-37795255)
chr7 (87-240)||(38306364-38306517)
chr7 (77-210)||(31971949-31972082)
chr7 (77-240)||(10244285-10244448)
chr7 (83-235)||(3419476-3419628)
chr7 (83-210)||(3867249-3867376)
chr7 (83-236)||(25160920-25161071)
chr7 (115-238)||(33435215-33435337)
chr7 (83-179)||(3419217-3419313)
chr7 (83-238)||(41089570-41089723)
chr7 (77-150)||(40726320-40726392)
chr7 (106-179)||(34390125-34390199)
chr7 (85-179)||(6585045-6585140)
[»] scaffold0343 (1 HSPs)
scaffold0343 (77-238)||(5811-5972)
[»] chr6 (3 HSPs)
chr6 (77-240)||(3117596-3117759)
chr6 (84-208)||(10541967-10542091)
chr6 (77-198)||(14663222-14663343)
[»] chr4 (10 HSPs)
chr4 (77-238)||(8255132-8255293)
chr4 (77-238)||(8268550-8268711)
chr4 (77-237)||(30167380-30167539)
chr4 (78-240)||(30964544-30964702)
chr4 (116-235)||(4305833-4305951)
chr4 (77-179)||(8705959-8706061)
chr4 (83-147)||(20464786-20464850)
chr4 (94-238)||(31050493-31050636)
chr4 (106-179)||(2825946-2826019)
chr4 (83-179)||(35341161-35341256)
[»] scaffold0068 (1 HSPs)
scaffold0068 (77-238)||(35590-35748)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 10524366 - 10524200
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10524366 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagc 10524267  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaacacc 243  Q
    ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  10524266 cacatatcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaacacc 10524200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 17116694 - 17116854
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa-ctcccaaaccccaacacccaagctgag 175  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||| ||| || ||||||||||||||||||||    
T  17116694 agcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgag 17116793  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    |||| |  ||||||||||||||| || |||||| |||| ||||||||||||||||||||||    
T  17116794 ccacattacgaagagcacctaaccgatggatcaagtagatatcacaaacctcgcgacctcc 17116854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 39338695 - 39338841
Alignment:
Q  92 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagc 191  Q
    |||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||||||||| |||   |||||||||    
T  39338695 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagc 39338794  T
Q  192 acctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||    
T  39338795 acctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 39338841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 387420 - 387280
Alignment:
Q  97 caccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcaccta 196  Q
    |||||||| |||||||||||| |||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||| |||||||||||||||     
T  387420 caccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctg 387321  T
Q  197 actgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    |||||| || |||| |||| ||  |||||||| |||||||||    
T  387320 actgaatgaacatgcagct-tccaaaacctcgtgacctccga 387280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 7874550 - 7874454
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||| |||||||| |||  ||||||||||||||||||| ||||||||| ||||  |||||||||||| | ||  ||||||||||||||||||||    
T  7874550 gtaaacacagtatccacaaccacccatcgtcactactcaccc-caaagaacatccctcaaaataaaactccaagacttcaacacccaagctgagccac 7874454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 14106343 - 14106440
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||| |||||||| |||   |||||||||||||||||| ||||||||| ||||  ||||||||||| || ||  ||||||||||||||||||||    
T  14106343 gtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccac 14106440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 7460912 - 7460839
Alignment:
Q  107 catcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||||||||||| || ||||||||||||  |||| ||||||||||| ||  ||||||||||||||||||||    
T  7460912 catcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctgagccac 7460839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 5254511 - 5254419
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||| |||||||| |||  ||||||||||||||||||  ||||||||||||  |||  ||||||| || ||  |||||||||| |||||||||    
T  5254511 gtaaacacagtatccacaaccacccatcgtcactactcacc--caaagaacacccctcaa--aaaactctcagacttcaacacccaaactgagccac 5254419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 47235964 - 47235806
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||| |    
T  47235964 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaac 47235865  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 235  Q
    ||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  47235864 cacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctc 47235806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 31483143 - 31482991
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||| |     
T  31483143 gtaaacatggtatccaccactgttcatcgtcactactaacccacaaagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatt 31483045  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  31483044 tcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctcc 31482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 2392321 - 2392482
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgag 175  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||||||||||    
T  2392321 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc-tacaaaataaaactcctagaccccaacacccaagctgag 2392419  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    |||| | | ||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  2392420 ccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2392482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 2394085 - 2394246
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgag 175  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||||||||||    
T  2394085 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc-tacaaaataaaactcctagaccccaacacccaagctgag 2394183  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    |||| | | ||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  2394184 ccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 34475577 - 34475728
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  |||||| || ||||||||||| |||||||| ||| |     
T  34475577 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacacccttaaaa--aaactctcataccccaacacctaagctgagtcacatt 34475674  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  34475675 tcgaagagcacctaaccgaaggatcatacagctatcacaaacctcgcgacctcc 34475728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 20612048 - 20611888
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||   ||||||||||| | |||| |||||||||||||||     
T  20612048 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctagaccc-aacacccaagctgagt 20611950  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| | |||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  20611949 cacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 20611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 53248167 - 53248007
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa-ctcccaaaccccaacacccaagctgag 175  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||  |||||||| ||| || |||||||||||||| |||||    
T  53248167 agcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgag 53248068  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    |||| | ||||||||||| |||| ||||||||||  | |||||||||||||||||||||||    
T  53248067 ccacatttcgaagagcacataaccgaaggatcatacaactatcacaaacctcgcgacctcc 53248007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 45164115 - 45163960
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||||||||| || ||||| |||||||||||| ||||| ||||| ||||||||  |||||||||||| | ||||||||||||||||| |||||| |     
T  45164115 gtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatt 45164016  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  45164015 tcgaagagcacctaaccgaaggatcatgcagctatcacaaacttcgtgacctccga 45163960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 17551210 - 17551062
Alignment:
Q  85 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatc 184  Q
    ||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| | ||    
T  17551210 aaacaaggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttc 17551111  T
Q  185 gaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||||||||||||||      |||||| |||||||||||||||||||||||||||    
T  17551110 gaagagcacctaac-----catcatgcagctatcacaaacctcgcgacctccga 17551062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 43012635 - 43012484
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||||||| |||||||||| |||||||||||  |||||||||||||  || ||||||||| | |||||||||||||||||||||||| |     
T  43012635 gtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatt 43012536  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 235  Q
    ||||||||||||| || ||| ||||||| | ||  ||| ||||||||||||||    
T  43012535 tcgaagagcacctgaccgaacgatcatgcaacttccac-aacctcgcgacctc 43012484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 19176770 - 19176608
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||  ||||||||| |||| ||||| |||||||||||||||    
T  19176770 agcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagc 19176671  T
Q  177 cacgtatcgaagagcacctaactg--aaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| |  |||||||||||| || |  |||||||||| ||||  ||| ||||| |||||||||||    
T  19176670 cacattacgaagagcacctgaccgaaaaggatcatgcagcttccac-aaccttgcgacctccga 19176608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 30352262 - 30352356
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||  ||| |||||||| | ||||||||||||||||||||||||    
T  30352262 gtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccct--aaaaaaaactccgagaccccaacacccaagctgagccac 30352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 9583870 - 9583999
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| || ||||||||| |||  |||||||||||||| ||||||| |||||||| ||||    
T  9583870 agcaccgtaaacacgatatccaccaccgcctatcgtcactactca-ccgcaaagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagc 9583968  T
Q  177 cacgtatcgaagagcacctaactgaaggatc 207  Q
    |||   ||||||||| ||| || ||||||||    
T  9583969 cacaattcgaagagcgcctgaccgaaggatc 9583999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 23328181 - 23328268
Alignment:
Q  93 tatccaccaccgtccatcgtcactactcacccacaaagaacacc-ctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||| ||  |||||||||||||| ||  ||||||||||||||||||||    
T  23328181 tatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccac 23328268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 40023393 - 40023490
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaac-accctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||  |||||||  ||||  |||||||||||||| ||  |||||||| |||||||||||    
T  40023393 gtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacaccctagctgagccac 40023490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 45399056 - 45398959
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||||  ||||||| | | |||||||||||||||||||| ||| |||||||| || ||||| |||||||||||  ||||||| ||| || |||||    
T  45399056 gtaaacacaatatccacaatcatccatcgtcactactcacccccaacgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccac 45398959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 5459421 - 5459264
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||||||||||||| |     
T  5459421 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatt 5459322  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    || ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  5459321 tcaaagagcacctaactgaaggatcatgcagctatcacaaacctcgcaacctccgaac 5459264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 5389237 - 5389399
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||  |||||||||||||| |||||||||||||||||||||    
T  5389237 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttacaa-gaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 5389335  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||| ||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||    
T  5389336 cacatatcgaagagcacttaaccgaaggaccatgtagctaacacaaacctcgcgacctccgaac 5389399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 24449745 - 24449906
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||    
T  24449745 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagc 24449844  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    | | | |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  24449845 cgcatttcgaagagcacctaaccgaaggatcatgcaactatcacaaacctcgcgacctccga 24449906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 46692634 - 46692797
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  46692634 agcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagc 46692733  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||| | ||||||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||    
T  46692734 cacatttcgaagagcacttaaccggaggataatgcagctatcacaaacctcgcgacctccgaac 46692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 41920717 - 41920557
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||| |     
T  41920717 gtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatg 41920618  T
Q  183 tcgaagagcacctaactga-----aggatcatgtagctatcacaaacctcgcgacctccga 238  Q
      |||||||||||||||||     ||||||||| |||||||||||||||||||||||||||    
T  41920617 atgaagagcacctaactgaaggttaggatcatgcagctatcacaaacctcgcgacctccga 41920557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 31585608 - 31585736
Alignment:
Q  111 gtcactactcacccacaaagaacaccctacaaataaaactcccaaacccc-aacacccaagctgagccacgtatcgaagagcacctaactgaaggatcat 209  Q
    ||||||||||||||||||||||||||||  ||||||||||| || ||||| |||||||||||| |||||| | ||||||||||||||||  |||||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcat 31585707  T
Q  210 gtagctatcacaaacctcgcgacctccga 238  Q
      |||||||||||||||||||||||||||    
T  31585708 acagctatcacaaacctcgcgacctccga 31585736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 6764224 - 6764359
Alignment:
Q  105 tccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaagg 204  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||  | ||||| |||||||| | |||||||||||||||| |||||    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaagg 6764323  T
Q  205 atcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    | |||| |||||||||||||||| || ||| |||||    
T  6764324 accatgcagctatcacaaacctcacgcccttcgaac 6764359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 30685800 - 30685882
Alignment:
Q  158 cccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    |||||||||||||||||||||| |||| | |||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  30685800 cccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaac 30685882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 6804806 - 6804745
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 138  Q
    ||||| ||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6804806 agcactgtaaatacagtatccaccaccgcccatcgtcactcctcacccacaaagaacaccct 6804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 46814288 - 46814385
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||| |||||||| |||||||||||||||||||||||  |||| |||| ||||  |||||||||||||| ||  ||||||||| || |||||||    
T  46814288 gtaaacacagtatccacaaccgtccatcgtcactactcacctccaaataacacccctcgaaataaaactcccatacttcaacacccacgccgagccac 46814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 30685745 - 30685797
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacac 135  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  30685745 gtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 7857890 - 7857816
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||| |||||||||||| || |||||||||  |||| ||||||||||| ||  |||||||||| |||||||||    
T  7857890 ccatcgccactactcacccccatagaacacccctcaaaataaaactcccagacttcaacacccaaactgagccac 7857816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 24684312 - 24684350
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactca 121  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  24684312 gtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 24684372 - 24684453
Alignment:
Q  156 accccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||||| ||| ||||| |||||||| | ||||||||||||| || ||||||||||| | ||  ||| |||||||||||||||||    
T  24684372 accccgacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcatcttccac-aacctcgcgacctccga 24684453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 31584858 - 31584894
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactact 119  Q
    ||||||||||||||||||||||  |||||||||||||    
T  31584858 gtaaacacggtatccaccaccgctcatcgtcactact 31584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 18593509 - 18593346
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  18593509 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagc 18593410  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||| | ||||||| |||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  18593409 cacatttcgaagaacacctaaccgaaggatcatgcacctatcacaaatctcgcgacctccgaac 18593346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 34378358 - 34378204
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |     
T  34378358 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacatt 34378259  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccg 237  Q
     ||||||||| ||||| |||||||||   | ||||||||||||||||||||||||    
T  34378258 acgaagagcatctaaccgaaggatcaaacaactatcacaaacctcgcgacctccg 34378204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 698614 - 698464
Alignment:
Q  90 cggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaaga 189  Q
    |||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| | || ||||    
T  698614 cggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaaga 698515  T
Q  190 gcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||||||||| ||||||| ||| |||||||||||||||||| ||||| ||||    
T  698514 gcacctaaccgaaggattatgcagctatcacaaacctcgcaacctctgaac 698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 7161831 - 7161969
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| ||||||||| | |||||||||  ||| ||||||||||||||| ||||||||||| |  |||||||||||||| |||||||||| ||||||||||    
T  7161831 agcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagc 7161930  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagct 215  Q
    ||| ||||||||| ||||| ||  |||||||||| ||||    
T  7161931 cacatatcgaagaacacctgaccaaaggatcatgcagct 7161969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 18313460 - 18313614
Alignment:
Q  79 caccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagcca 178  Q
    ||||||||||||| |||||| ||||   |||||||||||||||||||  |||||||||||| | | |||||||| ||| || || |||||| || |||||    
T  18313460 caccgtaaacacgatatccatcaccactcatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaaaacccaaactaagcca 18313558  T
Q  179 cgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacct 234  Q
    | | |||||||||||||||  ||| ||||||| |||||||||||||||||||||||    
T  18313559 catttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgacct 18313614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 29087745 - 29087587
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||| |||||  ||||||| |||||| ||||||||| | ||| |||||    
T  29087745 agcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaagaa-accctcaaaataaagctcccagaccccaacatctaagttgagc 29087647  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| || |||||||||||| ||  |||||||||| ||||| ||  |||||||||||||||||    
T  29087646 cacata-cgaagagcacctgaccaaaggatcatggagctacca-taacctcgcgacctccga 29087587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 20138693 - 20138531
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactcccaaaccccaacacccaagctgag 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||| | |    
T  20138693 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 20138594  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
     ||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20138593 tcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccga 20138531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 31207177 - 31207338
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||    
T  31207177 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagc 31207276  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| | |||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||    
T  31207277 cacatttcgaagagcacctaaccgaagggtcattcagctatcacaaacctcgcgacctccga 31207338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 37986679 - 37986836
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||||| |     
T  37986679 gtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatt 37986778  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  37986779 tcgaagagcacctaaccgaaggatcaggcagctatcacaaacctcgcgacctccgaac 37986836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 24995215 - 24995368
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaacccc-aacacccaagctgagccacgt 181  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||||||| | ||||| ||||||||||||||||||  |    
T  24995215 gtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatat 24995314  T
Q  182 atcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 235  Q
     |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24995315 ttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctc 24995368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 9519760 - 9519604
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca-aaccccaacacccaagctgagccacgt 181  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| || | ||||||||||||||||||||||  |    
T  9519760 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatat 9519661  T
Q  182 atcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
     |||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||    
T  9519660 ttcgaagagcacctaaccgaatgatcatgcagctatcacaaacttcgcaacctccga 9519604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 12898098 - 12898252
Alignment:
Q  85 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatc 184  Q
    ||||| || |||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||  | |||||||||||||||||||||||| | ||    
T  12898098 aaacatggaatccacaaccgttcatcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttc 12898197  T
Q  185 gaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  12898198 gaagagcacctaaccgaaggatca-gcagctatcacaaacctcgcgacctccgaac 12898252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 41893223 - 41893374
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||| ||| |||||||||||||||||||| |     
T  41893223 gtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatt 41893322  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 235  Q
    |||||||| |||| |  ||||||||||| ||||||||||||||| ||||||||    
T  41893323 tcgaagagtacct-atagaaggatcatgcagctatcacaaaccttgcgacctc 41893374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 32066119 - 32066273
Alignment:
Q  86 aacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcg 185  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| |||| | ||     
T  32066119 aacactgtatccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttca 32066218  T
Q  186 aagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||||||| ||||| ||| ||||||| |||||||||||||||||| ||||| ||||    
T  32066219 aagagcatctaaccgaatgatcatgcagctatcacaaacctcgcaacctctgaac 32066273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 34388828 - 34388977
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||||| |     
T  34388828 gtaaacacg-tatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatg 34388926  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacct 234  Q
      ||||| ||||||||||||||||||  ||||||||||||||||| ||||||    
T  34388927 atgaagaacacctaactgaaggatca-ctagctatcacaaacctcacgacct 34388977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 22773699 - 22773606
Alignment:
Q  143 ataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    |||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctcc 22773606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 16457290 - 16457368
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaa 155  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  16457290 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagaccaccctgaaaataaaactcccaa 16457368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 22773875 - 22773820
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 138  Q
    ||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||    
T  22773875 gtaaacatggtaaccaccactgcccatcgtcactactcacccacaaagaacaccct 22773820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 16457364 - 16457439
Alignment:
Q  165 cccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||||||||||||||| | || |||||||||||||   | ||||||| |||||||||||||||| |||| |||||||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaac 16457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 36631084 - 36630943
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||              |||||| | || ||||| ||| ||||| |||||||| |     
T  36631084 gtaaacacggtatccaccaccgcccatcgtaactactcacccccaaac-------------taaaacacgcagacccccacatccaagttgagccacatt 36630998  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||||||||||||| || ||||||||||| ||||  ||| |||||||||||||||||    
T  36630997 tcgaagagcacctgaccgaaggatcatgcagctcccac-aacctcgcgacctccga 36630943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 35821506 - 35821432
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 151  Q
    ||||| |||||||| ||||| | ||||| ||||| |||||||||| || |||||||||||||  |||||||||||    
T  35821506 agcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacacccttaaaataaaactc 35821432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 38577610 - 38577681
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactccc 153  Q
    |||||||| |||||||| | | ||||||||||||||||| || |||||||||| | || |||||||||||||    
T  38577610 gtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacactccacaaaataaaactccc 38577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 35816067 - 35816121
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 137  Q
    |||||||| |||||||| |||  ||||| ||||||||||||| ||||||||||||    
T  35816067 gtaaacacagtatccacaaccacccatcatcactactcacccccaaagaacaccc 35816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 5860112 - 5860266
Alignment:
Q  86 aacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcg 185  Q
    |||||||||| |||||  | |||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||| | |||    
T  5860112 aacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcg 5860211  T
Q  186 aagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5860212 aagagcacctaactgaaggatcatgcagctatcacaaacctcgcgacctccgaac 5860266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 44353378 - 44353540
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactcccaaaccccaacacccaagctgag 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||| | |    
T  44353378 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 44353477  T
Q  176 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
     ||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  44353478 tcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccga 44353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 47325700 - 47325861
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  47325700 agcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 47325799  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| | |||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  47325800 cacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 47325861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 37795255 - 37795092
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||||||||||||| ||||| | |||||| | ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  37795255 agcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagc 37795156  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    |||   |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  37795155 cacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaac 37795092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 38306517 - 38306364
Alignment:
Q  87 acacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcga 186  Q
    ||||| |||||||||||  |||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||||||||||||||| ||||||    
T  38306517 acacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcga 38306418  T
Q  187 agagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  38306417 agagcacttaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaac 38306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 31971949 - 31972082
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31971949 agcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagc 31972048  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatg 210  Q
    ||| | |||||||||||||||| |||||||||||    
T  31972049 cacatttcgaagagcacctaaccgaaggatcatg 31972082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 10244448 - 10244285
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||| ||| ||||| ||||| |||| ||||||||||||||||    
T  10244448 agcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagc 10244349  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    |||   || ||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  10244348 cacaattcaaagagcacctaaccgaaggatcatgcaactatcacaaacctcgcgacctccgaac 10244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 3419476 - 3419628
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| | ||||||       
T  3419476 gtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaat 3419575  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 235  Q
    |||||| ||||||||| ||||||||| | ||||||||||||||| | ||||||    
T  3419576 tcgaagcgcacctaaccgaaggatcaagcagctatcacaaaccttgtgacctc 3419628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 3867376 - 3867249
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||| || ||||||||||||||||||||| ||    
T  3867376 gtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacata 3867277  T
Q  183 tcgaagagcacctaactgaaggatcatg 210  Q
    ||||||||||||| ||  ||||||||||    
T  3867276 tcgaagagcacctgaccaaaggatcatg 3867249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 25161071 - 25160920
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||  |||||||||| || ||||||||||||||||||||||||||||||| |  |||  |||||| || ||||||||| | ||| |||||||| |     
T  25161071 gtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaacacctttaaaa--aaactctcagaccccaacatctaagttgagccacatt 25160974  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 236  Q
    || |||||||||||||||||||||||   ||||||||||||||| | |||||||    
T  25160973 tccaagagcacctaactgaaggatcacacagctatcacaaaccttgagacctcc 25160920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 33435337 - 33435215
Alignment:
Q  115 ctactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagc 214  Q
    |||||||||| |||||||||||||  ||| ||||||| || ||| ||||| ||||||||||||||   ||||||||||||| || |||||||||||||||    
T  33435337 ctactcacccccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagc 33435238  T
Q  215 tatcacaaacctcgcgacctccga 238  Q
    | |||| |||||||||||||||||    
T  33435237 tttcac-aacctcgcgacctccga 33435215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 3419217 - 3419313
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||| | ||||||||||||| |||| ||||||||||| |||||| ||||||||  |||||||||||||||||||||||||||||| | ||||||    
T  3419217 gtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaagttaagccac 3419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 41089570 - 41089723
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 182  Q
    |||||||| ||||| ||||||| |||| ||||||| | |||| |||||||||||||  |||||||||||||| |||| ||||||||   ||||| ||       
T  41089570 gtaaacacagtatctaccaccgcccattgtcactatt-acccgcaaagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacact 41089668  T
Q  183 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||||||||||||| |  |||| |||||| ||||  ||| |||||||||||||||||    
T  41089669 tcgaagagcacctcaacgaagaatcatgcagcttccac-aacctcgcgacctccga 41089723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 40726320 - 40726392
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 150  Q
    ||||| |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||  ||||||||||    
T  40726320 agcacggtaaacacggtatccaccaccgcctatcatcactactca-ccacaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 34390199 - 34390125
Alignment:
Q  106 ccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||||||||||| || ||||||||| ||||  |||||||||||||| ||  ||||||||||| ||||||||    
T  34390199 ccatcgtcactactcatccccaaagaacacccctcaaaataaaactcccagactacaacacccaagttgagccac 34390125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 6585140 - 6585045
Alignment:
Q  85 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||| |||||||| |||   |||||||||||||||||  |||| | |||||  |||| ||||||||||| ||  ||||||||||||||||||||    
T  6585140 aaacacagtatccacaaccactcatcgtcactactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacccaagctgagccac 6585045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 5972 - 5811
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||||||||||| |||||||||||||  ||||| |||||||||||||||||| ||||||||  |||||||||||||| | |||||||||||||||||||    
T  5972 agcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagc 5873  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| |  ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  5872 cacattacgaagagcacctaaccgaaggatcaagtagctatcacaaaccttgcgacctccga 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 3117759 - 3117596
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||| |||||||||  ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  3117759 agcactgtaaacacggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagc 3117660  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    ||| | ||||||||||| |||  ||||||||||| | |||||||||||||||||||||||||||    
T  3117659 cacatttcgaagagcacataatcgaaggatcatgcaactatcacaaacctcgcgacctccgaac 3117596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 10542091 - 10541967
Alignment:
Q  84 taaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtat 183  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||| | |    
T  10542091 taaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacattt 10541992  T
Q  184 cgaagagcacctaactgaaggatca 208  Q
    ||||||||||||||| |||||||||    
T  10541991 cgaagagcacctaaccgaaggatca 10541967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 14663343 - 14663222
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||||||||||||| |||||| ||||    
T  14663343 agcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagc 14663244  T
Q  177 cacgtatcgaagagcacctaac 198  Q
    ||| | ||||||| || |||||    
T  14663243 cacatttcgaagaacatctaac 14663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 8255293 - 8255132
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| |||||||||||   |||||||||||||||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||    
T  8255293 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8255194  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  8255193 cacattacgaagagcacctaactgatggatcaagcagctatcacaaacctcgcgacctccga 8255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 8268711 - 8268550
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| |||||||||||   |||||||||||||||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||    
T  8268711 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8268612  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    ||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  8268611 cacattacgaagagcacctaactgatggatcaagcagctatcacaaacctcgcgacctccga 8268550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 30167380 - 30167539
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||| || ||    
T  30167380 agcactgtaaacacggtatccaccaccg-ccaacgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggc 30167478  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccg 237  Q
    ||| | ||||||||| | |||| ||||| ||||| |||||||| |||||||||||||||||    
T  30167479 cacatttcgaagagcgcttaaccgaagggtcatgcagctatcataaacctcgcgacctccg 30167539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 30964702 - 30964544
Alignment:
Q  78 gcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagcc 177  Q
    |||| ||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||   ||    |||||||| | |||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaacaccctcaaaataaaactcccagtacc----acccaagcagggcc 30964607  T
Q  178 acgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 240  Q
    || | |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  30964606 acatttcgaagagcacctaaccgaatgatcatgcagctatcacaaacctcgcgacctccgaac 30964544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 4305951 - 4305833
Alignment:
Q  116 tactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagct 215  Q
    |||||||||||||||| ||||||  ||||||||||||||||||| || ||||||| |||||||| | ||||||||||||| || ||||||||||| || |    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacat-tcgaagagcacctcaccgaaggatcatgcagtt 4305853  T
Q  216 atcacaaacctcgcgacctc 235  Q
    ||||||||||| ||||||||    
T  4305852 atcacaaaccttgcgacctc 4305833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 8705959 - 8706061
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||  | |||||||||||||||||||||    
T  8705959 agcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacccaagctgagc 8706058  T
Q  177 cac 179  Q
    |||    
T  8706059 cac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 20464850 - 20464786
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaa 147  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||  |||||||    
T  20464850 gtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 31050493 - 31050636
Alignment:
Q  94 atccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagca 192  Q
    |||||||| | |||||||||||||||||||| ||| ||||| ||||  |||||||||  ||| ||  ||||||||||||| ||||||  |||||| |||     
T  31050493 atccaccatcatccatcgtcactactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacccaagcttagccac-aatcgaaaagct 31050591  T
Q  193 cctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    |||||| ||| || |||| ||||  ||| |||||| ||||||||||    
T  31050592 cctaaccgaatgaacatgcagcttccac-aacctctcgacctccga 31050636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 2826019 - 2825946
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 179  Q
    ||||||||||||||||||| || |||||||||  |||| ||||||||||||||  |||||||||| |||| ||||    
T  2826019 ccatcgtcactactcaccc-cagagaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccac 2825946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 35341161 - 35341256
Alignment:
Q  83 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 179  Q
    |||||||| |||||| | |||  ||||||||||||||||||| || |||||| ||||  |||||||||||||||||  ||||| |||| |||||||||    
T  35341161 gtaaacacagtatccgcaaccacccatcgtcactactcaccc-cagagaacacccctcaaaataaaactcccaaacttcaaca-ccaaactgagccac 35341256  T

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Target: scaffold0068 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 35590 - 35748
Alignment:
Q  77 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 176  Q
    ||||| |||||||| ||||||||||| | |||||||||| |||||||  | |||||||| ||| |||  ||||||||| |||||||||||||||||||||    
T  35590 agcactgtaaacacagtatccaccactgcccatcgtcac-actcacctgctaagaacactctaaaaa--aaactcccacaccccaacacccaagctgagc 35686  T
Q  177 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 238  Q
    | | | |||||||||||||||| || |||||||| |||||||||||| |||| |||||||||    
T  35687 ctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcgtgacctccga 35748  T

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