View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_217 (Length: 249)
Name: NF8521A_low_217
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_217 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35137139 - 35137385
Alignment:
| Q |
1 |
aaattacaacattcatcaagttactttttgtactcatacatccatgttgtgtctcacatcatgcactatcctgctcaattgtttgaacatgttttttccc |
100 |
Q |
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| T |
35137139 |
aaattacaacattaaacaagttactttttgtactcatacatccatgttgtgtctcacatcatgcactatcctgctcaattgtttgaacatgttttttccc |
35137238 |
T |
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| Q |
101 |
attcaaataaatagcatagtctactcattcaataggtgcgaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagt |
200 |
Q |
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| T |
35137239 |
attcaaataaatagcatagtctactcattcaataggtgcgaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagt |
35137338 |
T |
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| Q |
201 |
tttctgattccattgagaaagttgaattctacatattcttggacatg |
247 |
Q |
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| T |
35137339 |
tttctgattccattgagaaagttgaattctacatatgcttgggcatg |
35137385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 35129956 - 35130152
Alignment:
| Q |
34 |
tcatacatccatgttgtgtctcacatcat---gcactatcctgctcaattgtttgaacatgttttttcccattcaaataaatagcatagt---ctactca |
127 |
Q |
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| T |
35129956 |
tcatacatccatgttgtgtctcacatcatcatgcacaactctgctgaattgtttgaacatgttttttcccat------aaatagcatagtactctactca |
35130049 |
T |
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| Q |
128 |
ttcaataggtgcgaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagttttctgattccattgagaaagttgaat |
227 |
Q |
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| T |
35130050 |
ttcaataggcgccaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctcctcgtcaagttttctgattccattgagaaagttgaat |
35130149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 206 - 143
Alignment:
| Q |
170 |
gttccacttttcaatctcctgctcgttgagt---tttctgattccattgagaaagttgaattct |
230 |
Q |
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| T |
206 |
gttccactttacaatctcctcctcattaagtgattttctgattcctttgagaaagttgaattct |
143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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