View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_218 (Length: 249)
Name: NF8521A_low_218
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_218 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 25769676 - 25769822
Alignment:
| Q |
16 |
catgggattaagtgattaatagtgatctcgtcggaatcataatagattatcgtgatttatatagaatgtaaactatatagattcaacaaaattacaataa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25769676 |
catgggattaagtgattaatggtgatctcgtcggaatcataatagattatcgtgatttatatagaatgtaaactatatagattcaacaaaattacaataa |
25769775 |
T |
|
| Q |
116 |
catcatgatggatattatttttcctaactacactaagttattttcct |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25769776 |
tatcatgatggatattatttttcctaactacactaagttcttttcct |
25769822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 25770066 - 25770147
Alignment:
| Q |
164 |
gctaccaaaatgtgtagtaactagtaacttttatctaaagaggccaaagnnnnnnngctggaagatgacagaaacaccaaac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25770066 |
gctaccaaaatgtgtagtaactagtaacttttatctaaagaggccaaagaaaaaaagctggaagatgacagaaacaccaaac |
25770147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University