View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_220 (Length: 249)
Name: NF8521A_low_220
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_220 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 32553193 - 32553405
Alignment:
| Q |
1 |
gaatgtgaatgccaatgtggaatccgttattcttagtttcatctccttcaacatatttggaggcagctccacatagcacatgtttctacattatattgac |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
32553193 |
gaatgtgaatgtcaatgtgaaatccgttatacttattttcatctccttcaacatatttggaggcagcttcacatagcacacttttctacattatattttc |
32553292 |
T |
|
| Q |
101 |
aaccgtatggagaattgtgaggtgttatttggtcacttgataggaataacctaattggtgaaacannnnnnnaagactaaattgaaacatataatacgct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
32553293 |
agccgtatggagaattgtgaggtgttattttgtcacttgataggaataacctaatttgtgaaacattttttttagactaaattcaaacatataatacgct |
32553392 |
T |
|
| Q |
201 |
aagaccaaaacaa |
213 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
32553393 |
aagactaaaacaa |
32553405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University