View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_225 (Length: 248)
Name: NF8521A_low_225
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_225 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 30411014 - 30411230
Alignment:
| Q |
11 |
cagagaacagtgctaatgatgatgaacaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatggagccaatgat |
110 |
Q |
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| T |
30411014 |
cagaaaacagtgctaatgatgatgatcaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatgaagccaatgat |
30411113 |
T |
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| Q |
111 |
ggtgactttgaacaagatcttaatgctgtcaagtaacaggtcaggaggtaaatacagctagaaacttgattggtaagttacctgcagaaacatctttttc |
210 |
Q |
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| T |
30411114 |
ggtgactttgaacaagatctcaatgctgtcaa--tacaggtcaggaggcaaatacatctagaaacttgattggtaagttacctgcagaaacatctttgtc |
30411211 |
T |
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| Q |
211 |
caaagaagcagatgctctt |
229 |
Q |
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| T |
30411212 |
caaagaagcagatgctctt |
30411230 |
T |
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