View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_235 (Length: 245)
Name: NF8521A_low_235
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_235 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 30768443 - 30768232
Alignment:
| Q |
17 |
acatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagca |
116 |
Q |
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| T |
30768443 |
acatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagca |
30768344 |
T |
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| Q |
117 |
aagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcggcgaaaatcaaactctgaaacc |
216 |
Q |
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| T |
30768343 |
aagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcagcgaaaatcaaactctgaaacc |
30768244 |
T |
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| Q |
217 |
tctagaagaagt |
228 |
Q |
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|||||||||||| |
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| T |
30768243 |
tctagaagaagt |
30768232 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 39077411 - 39077242
Alignment:
| Q |
23 |
aaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcag |
122 |
Q |
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| T |
39077411 |
aaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctg |
39077312 |
T |
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| Q |
123 |
tggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaat |
192 |
Q |
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| T |
39077311 |
ttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagcttccaccatggaatccaat |
39077242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 22328000 - 22328097
Alignment:
| Q |
47 |
cgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
144 |
Q |
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||||||||||| ||||| || || |||||||||| || |||||||| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
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| T |
22328000 |
cgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagtcgattggctcattaaaaaagc |
22328097 |
T |
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