View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_236 (Length: 245)
Name: NF8521A_low_236
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_236 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 31076098 - 31075866
Alignment:
| Q |
1 |
atgattaaaaaagagtagtcaaaataatgcagtgaagatgtgacaacttatttatttacctccttcnnnnnnncttatttatttaccaattcaaagtgtc |
100 |
Q |
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| T |
31076098 |
atgataaaaaaagagtagtcaaaataatgcattaaagatgtgacaacttatttatttacctccttcaaaaaaacttatttatttaccaattcaaagtgtc |
31075999 |
T |
|
| Q |
101 |
ataggataattgtttttattgaataaaaacatagaattaaatataaaacgtattaaatgtgaaaatttcacgagtttaaccaatgttgtgctaccctgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31075998 |
ataggataattgtttttattgaataaaaacatagaattaaatataaaacgtattaaatgtgaaaatttcacgagtttaaccaatgttgtgctaccctgcc |
31075899 |
T |
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| Q |
201 |
aaagcaaacaaaaagaattatatatgagatatt |
233 |
Q |
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|||||||| |||||||||||| ||||||||||| |
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| T |
31075898 |
aaagcaaagaaaaagaattatttatgagatatt |
31075866 |
T |
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