View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_241 (Length: 244)
Name: NF8521A_low_241
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_241 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35450050 - 35449807
Alignment:
| Q |
1 |
tggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagtca |
100 |
Q |
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| T |
35450050 |
tggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagtca |
35449951 |
T |
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| Q |
101 |
attccttttcttgtaacttgttcatcttcaatgcttgaaactcaggaacgtggagcattttgttgttgatggaaaagtagcttttccaagagaagtcttt |
200 |
Q |
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| T |
35449950 |
attccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggatcattttgttgttgatggaaaactagcttttccaagagaagtcttt |
35449851 |
T |
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| Q |
201 |
cacattttacttatgcttcatctctttctctaatgatgttgttg |
244 |
Q |
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| T |
35449850 |
gacatttttcttgtgcttcatctctttctctaatgatgttgttg |
35449807 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21010633 - 21010701
Alignment:
| Q |
163 |
ttgttgatggaaaagtagcttttccaagagaagtctttcacattttacttatgcttcatctctttctct |
231 |
Q |
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|||||| |||||||||| |||||| |||| |||||||| |||||| ||| |||||||||||||||||| |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctttctct |
21010701 |
T |
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