View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_248 (Length: 243)
Name: NF8521A_low_248
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_248 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 39934038 - 39934211
Alignment:
| Q |
51 |
taacaatacattccccataaagaacaaccttgtccttaaggttatgggtagaggaaaaggttctccaatcttcctaagatgtatcatccgaagacaattt |
150 |
Q |
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| T |
39934038 |
taacaatacattccccataaagaacaaccttgtccttaaggttatgggtagaggaaaaggttctccaatcttcctaagatgtatcatccgaagacaattt |
39934137 |
T |
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| Q |
151 |
gtgccattgaaccaacacttgagaacgagtgactctattagcaactactttccttgagtctaagttggtcaaag |
224 |
Q |
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| T |
39934138 |
gtgccattcaaccaacacttgagaacgagtgactctattagcaactactttccttgagtctaagttggtcaaag |
39934211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39933944 - 39933997
Alignment:
| Q |
1 |
agggagcttgatagtgcgattgggcatgttgtagattggacttgcctcaataac |
54 |
Q |
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| T |
39933944 |
agggagcttgatagtgcgattgggcatgttgtagattggacttgcctcaataac |
39933997 |
T |
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