View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_25 (Length: 437)

Name: NF8521A_low_25
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_25
NF8521A_low_25
[»] chr4 (2 HSPs)
chr4 (9-431)||(40821517-40821938)
chr4 (326-431)||(40826201-40826306)
[»] chr7 (9 HSPs)
chr7 (131-431)||(20292021-20292311)
chr7 (311-420)||(20301393-20301502)
chr7 (333-431)||(20064893-20064991)
chr7 (326-431)||(20229247-20229352)
chr7 (326-431)||(20261830-20261935)
chr7 (243-318)||(20092587-20092660)
chr7 (335-431)||(20170431-20170527)
chr7 (335-431)||(20172424-20172520)
chr7 (311-431)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (309-354)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 40821938 - 40821517
Alignment:
Q  9 aagaatattttgaataaagaaatgattcttgtagatctgagaggatacatacttgattccatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnn 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                    
T  40821938 aagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaaga 40821839  T
Q  109 nnnnntgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttag 208  Q
         ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40821838 aaag-tgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttag 40821740  T
Q  209 actcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821739 actcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc 40821640  T
Q  309 gttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaagga 408  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40821639 gttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaagga 40821540  T
Q  409 caccgaaactcttatctccaaag 431  Q
    ||| |||||||||||||||||||    
T  40821539 cactgaaactcttatctccaaag 40821517  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
Q  326 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 425  Q
    |||||| |||| ||| ||| ||||||||   ||||| |||||||||| |||  || |||||||||||| |||| ||| |||||| | ||||||||  |||    
T  40826306 tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct 40826207  T
Q  426 ccaaag 431  Q
    ||||||    
T  40826206 ccaaag 40826201  T

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Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 131 - 431
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
Q  131 agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa 227  Q
    ||||||||| |||||| ||| |||| ||||| |||| |||    |||| |||||  |||||||| |||||||||||||||||||||| |||||   ||||    
T  20292021 agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa 20292116  T
Q  228 tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc 327  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||      ||||||||||||||    
T  20292117 tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc 20292207  T
Q  328 tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc 427  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  20292208 tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc 20292307  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 420
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
Q  311 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 410  Q
    ||||||||| || ||| |||| |||||||| |||||| |||||||||||  |||||||| |  |||  || ||||||||||||||||| ||| ||||||     
T  20301393 tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc 20301492  T
Q  411 ccgaaactct 420  Q
    | ||||||||    
T  20301493 ctgaaactct 20301502  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
Q  333 tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 431  Q
    |||||||| ||||||  ||||||||||| |||||||| |  |||  || ||||||||||||||||| ||| |||||| | ||||| ||  |||||||||    
T  20064991 tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag 20064893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
Q  326 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 425  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20229247 tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20229346  T
Q  426 ccaaag 431  Q
    ||||||    
T  20229347 ccaaag 20229352  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
Q  326 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 425  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20261830 tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20261929  T
Q  426 ccaaag 431  Q
    ||||||    
T  20261930 ccaaag 20261935  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
Q  243 aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa 318  Q
    ||||||||||||||||||||| ||||||||| | | | | ||||||| |||||  |||||||||  ||||||||||    
T  20092660 aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa 20092587  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
Q  335 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 431  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20170527 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20170431  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
Q  335 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 431  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20172520 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20172424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 20296617 - 20296737
Alignment:
Q  311 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 410  Q
    ||||||||| || | |||||| | | |||| |||||||| ||||||||||  | ||||||||||||  ||  || ||||| ||||||| ||| ||||||     
T  20296617 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 20296716  T
Q  411 ccgaaactcttatctccaaag 431  Q
    | |||||||| ||||| ||||    
T  20296717 ctgaaactctaatctcaaaag 20296737  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
Q  309 gttgttcaaatatgctctctgttctgttcattttgttttgctattt 354  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||    
T  135603 gttgttcaaatgtgttctctgttttgttaattttgttttgctattt 135558  T

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