View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_251 (Length: 243)
Name: NF8521A_low_251
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_251 |
 | |
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| [»] scaffold0286 (1 HSPs) |
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| [»] chr6 (12 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
| | |
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| [»] scaffold0349 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 12685 - 12459
Alignment:
| Q |
17 |
atcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
12685 |
atcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttg |
12586 |
T |
|
| Q |
117 |
ctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12585 |
ctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcaca |
12486 |
T |
|
| Q |
217 |
agtttagcaagtaaaatcattatgaaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
12485 |
agtttagcaagtaaaatcattatgaaa |
12459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 2170576 - 2170802
Alignment:
| Q |
17 |
atcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2170576 |
atcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttg |
2170675 |
T |
|
| Q |
117 |
ctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170676 |
ctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcaca |
2170775 |
T |
|
| Q |
217 |
agtttagcaagtaaaatcattatgaaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2170776 |
agtttagcaagtaaaatcattatgaaa |
2170802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 2188050 - 2187824
Alignment:
| Q |
17 |
atcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttg |
116 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| | |
|
|
| T |
2188050 |
atcactgttgggatgcctgttatccgttgatagactagcaacgaagagagctatggaagggaacctgccacgaaaccaaaaagaaattgatggtccctcg |
2187951 |
T |
|
| Q |
117 |
ctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcaca |
216 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||| |
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|
| T |
2187950 |
ctttggtgatcaaaccactctggaaccctagcacttcctgccaaactaaactcggtgcctccatcttcatgcaaatgctgttatttgtaaagaactaaca |
2187851 |
T |
|
| Q |
217 |
agtttagcaagtaaaatcattatgaaa |
243 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
2187850 |
agtttagcaagaaaaatcattatgaaa |
2187824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 28142797 - 28142629
Alignment:
| Q |
31 |
gcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaa |
130 |
Q |
| |
|
||||||||| || |||||| |||||| ||||| ||| |||||||||||| | |||||||||||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
28142797 |
gcttgttatttatggatttagtagcaaagaagatagccatggaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaa |
28142698 |
T |
|
| Q |
131 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgtta |
199 |
Q |
| |
|
||||||||||||||| | |||||||| ||| ||| || |||| |||| | ||||||| |||||||| |
|
|
| T |
28142697 |
ccactctggaatcctttctgttcctgcccaacgaaaatctgtgcttccagcctcatgcagttcctgtta |
28142629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 28246497 - 28246359
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
160 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
28246497 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
28246398 |
T |
|
| Q |
161 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
199 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
28246397 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
28246359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 28525367 - 28525229
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
160 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| ||| ||||| ||| |
|
|
| T |
28525367 |
agagagcaatggaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatccttgcaaatcctggcaa |
28525268 |
T |
|
| Q |
161 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
199 |
Q |
| |
|
|| |||| ||| |||||| | ||||||| |||||||| |
|
|
| T |
28525267 |
acaaaacctggttcctccagcctcatgcagttcctgtta |
28525229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 28239519 - 28239435
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcct |
145 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
28239519 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
28239435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26805614 - 26805556
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
26805614 |
acgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcc |
26805556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 27715568 - 27715626
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
27715568 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
27715626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26887884 - 26887826
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
||||||||||||||||| || | ||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
26887884 |
acgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcc |
26887826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 27682049 - 27681991
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
27682049 |
acgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcc |
27681991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 29671548 - 29671593
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattga |
106 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
29671548 |
agagagctatggcaggaaacttgttacgaaaccagaaagaaattga |
29671593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 29829203 - 29829103
Alignment:
| Q |
41 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctgga |
140 |
Q |
| |
|
||||||||||| | |||||||||| | ||||| |||| | ||| ||||||||| ||||| ||||| || ||| | |||| || ||||||||||||||| |
|
|
| T |
29829203 |
cattgatttacaaacaacgaagagggttatggtggggagcttgttacgaaaccaaaaagatattgatggccccctattttggtgctcaaaccactctgga |
29829104 |
T |
|
| Q |
141 |
a |
141 |
Q |
| |
|
| |
|
|
| T |
29829103 |
a |
29829103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 46659 - 46521
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
160 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
46659 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
46560 |
T |
|
| Q |
161 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
199 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
46559 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
46521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 39681 - 39597
Alignment:
| Q |
61 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcct |
145 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
39681 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
39597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 16377 - 16319
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
16377 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
16319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 29270904 - 29270962
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| || || ||||| ||||| |||| |
|
|
| T |
29270904 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcc |
29270962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 17990204 - 17990262
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| | | ||| ||||||| || |||||||| |||||||||| |
|
|
| T |
17990204 |
acgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcc |
17990262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 265393 - 265451
Alignment:
| Q |
86 |
acgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcc |
144 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| || |||||||| ||||| |||| |
|
|
| T |
265393 |
acgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcc |
265451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 55270 - 55355
Alignment:
| Q |
60 |
aagagagctatggaagggaacctgtcacgaaaccagaaagaaattgagggtcccttgctttgttgatcaaaccactctggaatcct |
145 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||||||| |||||||| | ||||| || |||| || |||||||||||||||||||| |
|
|
| T |
55270 |
aagagagccgtggaagggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcct |
55355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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