View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_252 (Length: 243)
Name: NF8521A_low_252
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_252 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 44228136 - 44228282
Alignment:
| Q |
1 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
100 |
Q |
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| T |
44228136 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
44228235 |
T |
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| Q |
101 |
cctatagagttgaagattagattatccaatttcttactggtcttaat |
147 |
Q |
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| T |
44228236 |
cctatagagttgaagatcagattatccaatttcttactggtcttaat |
44228282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 44231753 - 44231845
Alignment:
| Q |
151 |
atattgatgaccaaagttattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaa |
243 |
Q |
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| T |
44231753 |
atattgacgaccaaaattattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaa |
44231845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 44669212 - 44669066
Alignment:
| Q |
1 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
100 |
Q |
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| T |
44669212 |
gagatgaaggcgttatgggaagaattgcattcacataggccacttcctaactgcaattgtccatttcagtgtaaatgtgatgttattaaagtacctaaat |
44669113 |
T |
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| Q |
101 |
cctatagagttgaagattagattatccaatttcttactggtcttaat |
147 |
Q |
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| T |
44669112 |
cctatagaattgaagaccaaatcattcaatttcttactggtcttaat |
44669066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 34437807 - 34437760
Alignment:
| Q |
195 |
aatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattca |
242 |
Q |
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| T |
34437807 |
aatgcaaaaatatttcatagtatcatcactcaaacttgtgcttattca |
34437760 |
T |
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