View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_253 (Length: 242)
Name: NF8521A_low_253
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_253 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 26975524 - 26975725
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26975524 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
26975623 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
219 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26975624 |
atctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
26975723 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
26975724 |
ct |
26975725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 26636219 - 26636416
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26636219 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26636318 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
26636319 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaa |
26636416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 26742185 - 26742382
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26742185 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26742284 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
26742285 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaa |
26742382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 26950316 - 26950517
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26950316 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26950415 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
219 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||| || | |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26950416 |
atctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaagacaaca |
26950515 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
26950516 |
ct |
26950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 26959699 - 26959900
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
26959699 |
atgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
26959798 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
219 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||| ||||| || | |||||||||| ||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26959799 |
atctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaagacaaca |
26959898 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
26959899 |
ct |
26959900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 27664797 - 27664613
Alignment:
| Q |
37 |
tttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaaatctcgaatatcagaag |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
27664797 |
tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag |
27664698 |
T |
|
| Q |
137 |
tgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact |
221 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27664697 |
tgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaagacaacact |
27664613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 26849285 - 26849486
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||||| |||||| | ||||||||||||||||| |||||||| || |
|
|
| T |
26849285 |
atgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttggacttaa |
26849384 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||| | ||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
26849385 |
atctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaaacaaca |
26849484 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
26849485 |
ct |
26849486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 25074443 - 25074638
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||||||| |||||||||| ||||| || |
|
|
| T |
25074443 |
atgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtcttcg |
25074542 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaac |
218 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| | || ||||||| | ||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
25074543 |
atctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaagacaac |
25074638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 31288878 - 31288986
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
31288878 |
atgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
31288977 |
T |
|
| Q |
120 |
atctcgaat |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
31288978 |
atctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 31288986 - 31289042
Alignment:
| Q |
165 |
tgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact |
221 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
31288986 |
tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacact |
31289042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 17992824 - 17992626
Alignment:
| Q |
20 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| |||||||| |||| ||||| |
|
|
| T |
17992824 |
atgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaa |
17992725 |
T |
|
| Q |
120 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaac |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | || |||||| |||| |||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
17992724 |
atctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaagacaac |
17992626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University