View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_258 (Length: 242)
Name: NF8521A_low_258
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_258 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45123580 - 45123339
Alignment:
| Q |
1 |
gagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaacat |
100 |
Q |
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| T |
45123580 |
gagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaacat |
45123481 |
T |
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| Q |
101 |
ttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggagacg |
200 |
Q |
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| T |
45123480 |
ttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagacg |
45123381 |
T |
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| Q |
201 |
aaactatgatcattgtccaataacaactagaaaataatacta |
242 |
Q |
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| T |
45123380 |
aaactatgatcattgtccaatgacaactagaaaataatacta |
45123339 |
T |
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