View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_259 (Length: 242)

Name: NF8521A_low_259
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_259
NF8521A_low_259
[»] chr3 (4 HSPs)
chr3 (147-242)||(7779307-7779402)
chr3 (8-53)||(7779169-7779214)
chr3 (148-236)||(8713718-8713807)
chr3 (148-236)||(9065605-9065694)
[»] chr8 (1 HSPs)
chr8 (161-239)||(13581725-13581803)
[»] chr1 (2 HSPs)
chr1 (147-217)||(25664714-25664784)
chr1 (147-216)||(25132538-25132608)
[»] chr2 (1 HSPs)
chr2 (202-239)||(18932146-18932183)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 7779307 - 7779402
Alignment:
Q  147 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttgttg 242  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7779307 cttacctaacctagcctaattattgacaaaataaattctattgattaccttgtcgaaatatcaacaatccccaacaacaacgccaaaaatttgttg 7779402  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 7779169 - 7779214
Alignment:
Q  8 gggagctatgtgttaacacaattaaaagtgaggatagaaggacgtg 53  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7779169 gggagctatttgttaacacaattaaaagtgaggatagaaggacgtg 7779214  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 8713718 - 8713807
Alignment:
Q  148 ttacctaacctagcctaattattgacaaaa-taaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaac 236  Q
    |||||||||||| |||||||| | |||||| |||| ||||  |||||| |||||| |||||||| ||||||| ||||  |||||||||||    
T  8713718 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaac 8713807  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 9065605 - 9065694
Alignment:
Q  148 ttacctaacctagcctaattattgacaaaa-taaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaac 236  Q
    |||||||||||| |||||||| | |||||| |||| ||||  |||||| |||||| |||||||| ||||||| ||||  |||||||||||    
T  9065605 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaac 9065694  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 13581725 - 13581803
Alignment:
Q  161 cctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttg 239  Q
    |||||||||| |||||||||| |||||||||||  || |||||||||||| ||||||  |||||| || ||||||||||    
T  13581725 cctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacagcgtcaaaaacttg 13581803  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 25664714 - 25664784
Alignment:
Q  147 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccc 217  Q
    |||||||||||||  ||||||||| |||||||||| ||||  |||||| ||||||||||||||| ||||||    
T  25664714 cttacctaacctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatcaacaatccc 25664784  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 25132538 - 25132608
Alignment:
Q  147 cttacctaacctagcctaattattgac-aaaataaactctattgattactttgtcgaaatatcaagaatcc 216  Q
    |||||||||||||  ||||||||| || |||||||| |||| ||||||| |||| |||||||||| |||||    
T  25132538 cttacctaacctaaactaattattcacaaaaataaattctactgattaccttgttgaaatatcaacaatcc 25132608  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 18932146 - 18932183
Alignment:
Q  202 aaatatcaagaatccccaacaacaacgccaaaaacttg 239  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  18932146 aaatatcaacaatccccgacaacaacgccaaaaacttg 18932183  T

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