View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_262 (Length: 241)
Name: NF8521A_low_262
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_262 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10016787 - 10016916
Alignment:
| Q |
1 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaacttttataggatattttggtaaaatgatcacatataatttcaaatattcatta |
100 |
Q |
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| T |
10016787 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaatttttacaggatattttggtaaaatgatcacatataatttcaaatattcatta |
10016886 |
T |
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| Q |
101 |
atttcacacttttattttgtcttgctttaac |
131 |
Q |
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| T |
10016887 |
atttcacactttt-ttttgtcttgctttaac |
10016916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10254242 - 10254371
Alignment:
| Q |
1 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaacttttataggatattttggtaaaatgatcacatataatttcaaatattcatta |
100 |
Q |
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| T |
10254242 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaatttttacaggatattttggtaaaatgatcacatataatttcaaatattcatta |
10254341 |
T |
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| Q |
101 |
atttcacacttttattttgtcttgctttaac |
131 |
Q |
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| T |
10254342 |
atttcacactttt-ttttgtcttgctttaac |
10254371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10117194 - 10117324
Alignment:
| Q |
1 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaacttttataggatattttggtaaaatgatcacatataatttcaaatattcatta |
100 |
Q |
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| T |
10117194 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaatttttacaggatattttggtaaaatgaccacatataatttcaaatattcatta |
10117293 |
T |
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| Q |
101 |
atttcacacttttattttgtcttgctttaac |
131 |
Q |
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||||||| |||| ||||||||||||||||| |
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| T |
10117294 |
atttcactttttttttttgtcttgctttaac |
10117324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 10016947 - 10016984
Alignment:
| Q |
150 |
attgcctcaccatttacatatggacgtttccttaactg |
187 |
Q |
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| T |
10016947 |
attgcctcaccatttacatatggacgtttccttaactg |
10016984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 10117350 - 10117387
Alignment:
| Q |
150 |
attgcctcaccatttacatatggacgtttccttaactg |
187 |
Q |
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| T |
10117350 |
attgcctcaccatttacatatggacgtttccttaactg |
10117387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 10254400 - 10254437
Alignment:
| Q |
150 |
attgcctcaccatttacatatggacgtttccttaactg |
187 |
Q |
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| T |
10254400 |
attgcctcaccatttacatatggacgtttccttaactg |
10254437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 11308031 - 11307961
Alignment:
| Q |
2 |
ttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaacttttataggatattttggtaaaat |
72 |
Q |
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| T |
11308031 |
ttgtgatgtgaaaaaattgtgaagccagagatctaacttatagtattttttacaggataatttggtaaaat |
11307961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3565628 - 3565560
Alignment:
| Q |
1 |
gttgtgatgtgaaaaaattgttaaaccataggtctaatttatagtaacttttataggatattttggtaaa |
70 |
Q |
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| T |
3565628 |
gttgtgatgtgaaaat-tggtgaagccataggtctaatttatagtaatttttagagggtaatttggtaaa |
3565560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22168679 - 22168723
Alignment:
| Q |
26 |
ccataggtctaatttatagtaacttttataggatattttggtaaa |
70 |
Q |
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| T |
22168679 |
ccataggtctaatttatagtaatttttagagggtaatttggtaaa |
22168723 |
T |
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