View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_268 (Length: 239)

Name: NF8521A_low_268
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_268
NF8521A_low_268
[»] chr8 (12 HSPs)
chr8 (22-219)||(17722421-17722608)
chr8 (22-207)||(35948827-35949012)
chr8 (22-207)||(7956341-7956516)
chr8 (22-207)||(44223328-44223503)
chr8 (70-207)||(9505015-9505153)
chr8 (49-154)||(3767684-3767789)
chr8 (49-207)||(16570890-16571047)
chr8 (70-207)||(32321799-32321936)
chr8 (49-199)||(34760834-34760975)
chr8 (32-106)||(9040513-9040587)
chr8 (155-207)||(9040427-9040479)
chr8 (122-158)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (22-207)||(16584865-16585050)
chr1 (22-153)||(25785805-25785936)
chr1 (22-199)||(8083994-8084172)
chr1 (22-183)||(1161434-1161594)
chr1 (22-152)||(11619973-11620103)
chr1 (22-205)||(18461120-18461294)
chr1 (49-207)||(42009997-42010155)
chr1 (49-199)||(512961-513111)
chr1 (115-208)||(32678514-32678607)
chr1 (117-199)||(8414674-8414756)
chr1 (24-162)||(11911629-11911768)
chr1 (117-184)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (28-207)||(23107918-23108097)
chr4 (22-204)||(4413456-4413639)
chr4 (22-208)||(24466316-24466502)
chr4 (22-185)||(28319291-28319454)
chr4 (70-199)||(53393204-53393333)
chr4 (70-204)||(8606181-8606315)
chr4 (118-207)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (31-208)||(16746550-16746727)
chr5 (35-207)||(31895896-31896068)
chr5 (22-204)||(19947711-19947893)
chr5 (22-148)||(16746422-16746548)
chr5 (70-185)||(1498243-1498358)
chr5 (56-199)||(29126091-29126234)
chr5 (159-197)||(41092125-41092163)
chr5 (116-176)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (22-208)||(581-767)
[»] chr7 (13 HSPs)
chr7 (22-207)||(7352371-7352555)
chr7 (22-208)||(39695086-39695267)
chr7 (22-146)||(46993309-46993433)
chr7 (24-154)||(7994998-7995128)
chr7 (22-152)||(11727329-11727449)
chr7 (49-207)||(48070614-48070772)
chr7 (70-207)||(3996991-3997128)
chr7 (71-175)||(46265353-46265457)
chr7 (35-175)||(2922986-2923125)
chr7 (116-199)||(12013026-12013109)
chr7 (56-207)||(27226938-27227089)
chr7 (143-199)||(12471855-12471911)
chr7 (143-195)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (22-207)||(46655514-46655700)
chr3 (56-204)||(44471020-44471168)
chr3 (32-208)||(11503337-11503513)
chr3 (56-208)||(30554574-30554726)
chr3 (110-199)||(46892612-46892701)
chr3 (70-171)||(27524053-27524154)
chr3 (56-152)||(779533-779629)
chr3 (111-199)||(23307117-23307205)
chr3 (142-205)||(12937849-12937912)
chr3 (49-207)||(26757593-26757751)
chr3 (76-162)||(44285605-44285691)
chr3 (107-207)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (28-207)||(31111413-31111592)
chr2 (28-205)||(13852276-13852453)
chr2 (22-154)||(4638207-4638339)
chr2 (49-207)||(29109190-29109348)
chr2 (23-195)||(3919857-3920029)
chr2 (22-88)||(36009278-36009344)
chr2 (88-207)||(12893980-12894099)
chr2 (76-162)||(37630375-37630461)
chr2 (32-154)||(38607020-38607141)
chr2 (70-199)||(5526225-5526353)
chr2 (121-208)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (22-147)||(1845-1970)
[»] chr6 (7 HSPs)
chr6 (71-204)||(7176529-7176662)
chr6 (70-177)||(23301441-23301548)
chr6 (117-207)||(11971456-11971546)
chr6 (49-177)||(23300455-23300583)
chr6 (50-152)||(7551423-7551525)
chr6 (76-197)||(9826747-9826868)
chr6 (70-147)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (117-207)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 17722421 - 17722608
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722421 tcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 17722520  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttgat 219  Q
    |||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  17722521 aaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttgat 17722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 35949012 - 35948827
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||| ||| || |  ||||||| ||||||||||||    
T  35949012 tcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaaccg 35948913  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948912 aaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 7956341 - 7956516
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||     
T  7956341 tcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacca 7956440  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956441 aacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 44223328 - 44223503
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||| |    
T  44223328 tcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaactg 44223427  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223428 aaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 9505153 - 9505015
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactt 168  Q
    ||||| |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||    
T  9505153 gaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattt 9505054  T
Q  169 tcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||| |||||||| | ||||||||| |||||||    
T  9505053 tcggtttcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  149 gtttgg 154  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| |||||||  ||||| ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 32321936 - 32321799
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||    
T  32321936 gaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggtttt 32321837  T
Q  170 cggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||  ||||||| ||||||||||  |||||||    
T  32321836 cggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  32 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcgg 106  Q
    ||||||||||||||  ||||||| |||| ||||| |  |||||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  155 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  122 aaccaaacaaggttggatattttttcggtttggttcg 158  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 16584865 - 16585050
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  16584865 tcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccg 16584964  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584965 aaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 25785936 - 25785805
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  25785936 tcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccg 25785837  T
Q  122 aaccaaacaaggttggatattttttcggtttg 153  Q
    ||||||||||||| ||||||||||||||||||    
T  25785836 aaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 8084172 - 8083994
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  8084172 tcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacca 8084073  T
Q  122 aaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084072 aaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 1161434 - 1161594
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  1161434 tcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaaccg 1161533  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 183  Q
    ||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161534 aaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 11620103 - 11619973
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |    
T  11620103 tcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaactg 11620004  T
Q  122 aaccaaacaaggttggatattttttcggttt 152  Q
    ||||||||||| | ||||||||||| |||||    
T  11620003 aaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 18461294 - 18461120
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||| ||||||    
T  18461294 tcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaaccg 18461195  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 205  Q
    ||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461194 aactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||| |||||  ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 513111 - 512961
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| |||||| | ||| | || |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| |||||||    
T  513111 gatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcg 513012  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    |||||||||| |||||  ||| | ||||||  ||||| | |||||||||||    
T  513011 gtttggttcgatttgggtttttgatttcatcagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  115 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  117 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 11911768 - 11911629
Alignment:
Q  24 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 123  Q
    ||||| ||||||||||||||   | ||| || |||| ||||| || |||| ||| |||||||||||||||| | || |||||| | |||||  |||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  124 ccaaacaaggttggata-ttttttcggtttggttcggttt 162  Q
    ||||||||||| ||||| ||||||||  |||||| |||||    
T  11911668 ccaaacaaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  117 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 184  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  28 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 127  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  128 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 4413639 - 4413456
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||    
T  4413639 tcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaaccg 4413540  T
Q  122 aaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 204  Q
    ||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413539 aaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 24466316 - 24466502
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||    
T  24466316 tcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaaccg 24466415  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    ||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466416 aaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 28319291 - 28319454
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||| ||||| |||||| | |||||  |||||||||| ||||| |||||||||||||||| || |||| ||| |||| |||||||  ||||||||||||    
T  28319291 tcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaaccg 28319390  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 185  Q
    |||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319391 aaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 53393204 - 53393333
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggatttt 53393303  T
Q  170 cggtttcattggttttattcgaaccactta 199  Q
    ||||||||| |||||| | |||||||||||    
T  53393304 cggtttcatcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 8606181 - 8606315
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| |    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactat 8606280  T
Q  170 cggtttcattggttttattcgaaccacttaaaccc 204  Q
    | ||||| | |||||| | ||||||||||| ||||    
T  8606281 cagtttcgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  118 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  31 tggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 130  Q
    |||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  131 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  35 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 134  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  135 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 19947893 - 19947711
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||| | ||||||| ||| |||| |||||||||| |    
T  19947893 tcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaactg 19947794  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 204  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947793 aaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 16746422 - 16746548
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  16746422 tcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccg 16746521  T
Q  122 aaccaaacaaggttggatattttttcg 148  Q
    |||||||||||||||||||||||||||    
T  16746522 aaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 1498243 - 1498358
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    |||||||||  ||||| |||||||| | || |||| | | |||||  |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||    
T  1498243 gaaccaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggatttt 1498342  T
Q  170 cggtttcattggtttt 185  Q
    ||||||||| ||||||    
T  1498343 cggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  56 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 155  Q
    |||||||||||   ||||||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  156 tcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  159 gtttggactttcggtttcattggttttattcgaaccact 197  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  116 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 176  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 581 - 767
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||    
T  581 tcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaaccg 680  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    ||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  681 aaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 7352371 - 7352555
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||     
T  7352371 tcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaacca 7352469  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352470 aaccaaataaagtcggatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 39695267 - 39695086
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||    
T  39695267 tcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaaccg 39695168  T
Q  122 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    ||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695167 aaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 46993433 - 46993309
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||||   ||||||||||    
T  46993433 tcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaaccg 46993334  T
Q  122 aaccaaacaaggttggatatttttt 146  Q
    | ||||||||||| | |||||||||    
T  46993333 acccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 7995128 - 7994998
Alignment:
Q  24 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 123  Q
    ||||||||||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||  |||||||    
T  7995128 atcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaa 7995029  T
Q  124 ccaaacaaggttggatattttttcggtttgg 154  Q
    |||||||||||   |||||||||| ||||||    
T  7995028 ccaaacaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 11727329 - 11727449
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||||           ||||||||||||||||    
T  11727329 tcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaaccg 11727418  T
Q  122 aaccaaacaaggttggatattttttcggttt 152  Q
    |||||||||||||   |||||||||||||||    
T  11727419 aaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 48070772 - 48070614
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||| |  ||||| || |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| |    
T  48070772 gatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttg 48070673  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||| ||||||||| || ||||||||| || | |||| | ||||||||||| |||||||    
T  48070672 gtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 3996991 - 3997128
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||    
T  3996991 gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggacttt 3997090  T
Q  170 cggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  3997091 cggtttcattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 46265353 - 46265457
Alignment:
Q  71 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 170  Q
    ||||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||    
T  46265353 aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttc 46265452  T
Q  171 ggttt 175  Q
    |||||    
T  46265453 ggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  35 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 134  Q
    |||||||||||   |||||| |||| |||||||| ||||| || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  135 tggatattttttcggtttggttcggtttggactttcggttt 175  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  116 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 27226938 - 27227089
Alignment:
Q  56 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 155  Q
    |||| ||||| || ||||| |||||||| || ||||||| |||| |||||| | || ||  | || ||||| ||||| | |||||  ||||  ||||| |    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatgggataccttttaagtttgtt 27227037  T
Q  156 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||||||| | |||||| |||||| | ||||| ||||| |||||||    
T  27227038 tcggtttggacttttgatttcatcggttttgtccgaacaacttacaccccta 27227089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  143 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  143 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 195  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 46655700 - 46655514
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  46655700 tcattggattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaaccg 46655601  T
Q  122 aaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||  ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655600 aaccaagtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 44471168 - 44471020
Alignment:
Q  56 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 155  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  |||||||||||||    
T  44471168 aaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggt 44471069  T
Q  156 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 204  Q
    |||||||||| ||||| |||||| |||||| | ||||||||||| ||||    
T  44471068 tcggtttggattttcgatttcatcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  32 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 131  Q
    |||| |||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  132 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 30554574 - 30554726
Alignment:
Q  56 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 155  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| |     
T  30554574 aaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagc 30554673  T
Q  156 tcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    ||| |||||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  30554674 tcgatttggattttcggtttcatcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  110 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 27524154 - 27524053
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||    
T  27524154 gaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggacttt 27524055  T
Q  170 cg 171  Q
    ||    
T  27524054 cg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 779533 - 779629
Alignment:
Q  56 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 152  Q
    |||| ||||| || ||||| ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779533 aaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  111 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 199  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  142 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 205  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 26757751 - 26757593
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||  || ||||| |||||| ||| |||| ||| | || |||||| |  |||| ||||  |||||||||| || | ||| |||||||    
T  26757751 gatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcg 26757652  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
     ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757651 attttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  76 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 162  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  107 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 206  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  207 a 207  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 31111592 - 31111413
Alignment:
Q  28 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 127  Q
    |||||||| ||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||||||||    
T  31111592 gattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaa 31111493  T
Q  128 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111492 acaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 13852276 - 13852453
Alignment:
Q  28 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 127  Q
    |||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |||    
T  13852276 gattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaa 13852375  T
Q  128 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 205  Q
    |||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852376 acaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 4638339 - 4638207
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    |||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||| || | |||| |||||||| | ||||||||||    
T  4638339 tcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaaccg 4638240  T
Q  122 aaccaaacaaggttggatattttttcggtttgg 154  Q
    |||| |||||||| |||||||||||||||||||    
T  4638239 aaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 29109190 - 29109348
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||| |  ||||||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| ||||||     
T  29109190 gatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttca 29109289  T
Q  149 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    ||||||||||||||||| |||| |||||||  ||||| | ||||||||||| |||||||    
T  29109290 gtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 3919857 - 3920029
Alignment:
Q  23 catcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 122  Q
    |||||| | ||||||||||||    ||||||| |||| |||||| | ||||||||||||||||||||||||| | || |||||| | |||||  |||| |    
T  3919857 catcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaa 3919956  T
Q  123 accaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 195  Q
    ||||||||| || | ||  |||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919957 accaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 36009344 - 36009278
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagat 88  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  36009344 tcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  88 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 187  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  188 tcgaaccacttaaaccccta 207  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  76 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 162  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 38607141 - 38607020
Alignment:
Q  32 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 131  Q
    ||||||||||||| |  |||||| |||| ||||| || ||||| |||||||| || || |||| |||| |||||| | |||||  || |||| |||||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaa-caaacaa 38607043  T
Q  132 ggttggatattttttcggtttgg 154  Q
    ||| |||||| ||||||||||||    
T  38607042 ggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 5526353 - 5526225
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| |||    
T  5526353 gaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatttt 5526255  T
Q  170 cggtttcattggttttattcgaaccactta 199  Q
    || |||| |||||||| | || ||||||||    
T  5526254 cgatttctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  121 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 208  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 1845 - 1970
Alignment:
Q  22 tcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccg 121  Q
    ||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||| |||| |||| |||| ||| | ||||||||||    
T  1845 tcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaaccg 1944  T
Q  122 aaccaaacaaggttggatattttttc 147  Q
    ||||||||||||| ||||||||||||    
T  1945 aaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 7176529 - 7176662
Alignment:
Q  71 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 170  Q
    |||| ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   ||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  171 ggtttcattggttttattcgaaccacttaaaccc 204  Q
    |||||||| |||||| | |||| |||||| ||||    
T  7176629 ggtttcatcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 23301548 - 23301441
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 169  Q
    ||||| |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaatttt 23301449  T
Q  170 cggtttca 177  Q
    ||||||||    
T  23301448 cggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  117 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 23300583 - 23300455
Alignment:
Q  49 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 148  Q
    |||||| |||| ||||| |  ||||| ||| |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||    
T  23300583 gatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcg 23300484  T
Q  149 gtttggttcggtttggactttcggtttca 177  Q
    ||||||||||||||| | |||||||||||    
T  23300483 gtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  50 atctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 149  Q
    |||||||||| |||||||| ||||| | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  150 ttt 152  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  76 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 174  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  175 tcattggttttattcgaaccact 197  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 23585990 - 23585913
Alignment:
Q  70 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 147  Q
    |||||||||||||||| ||||||||   |||||| || | |||||  |||||||| ||||||||| ||||| ||||||    
T  23585990 gaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactttttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  117 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 207  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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