View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_269 (Length: 239)
Name: NF8521A_low_269
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_269 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 29561406 - 29561221
Alignment:
| Q |
31 |
agaaagaaaaaca--tgctgctagaggtggattactggttccaaagcgaatgccgttccaagacattggaaacaactcgtcgttgttgatgaggcagcaa |
128 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||| || ||||||| ||||||||| |
|
|
| T |
29561406 |
agaaagaaaaacacatgctgctagaggtggactactagttccaaaacgaatgccgttccaagacattgggaacaactcttcattgttgacgaggcagcag |
29561307 |
T |
|
| Q |
129 |
aatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaactaatcgcttgaatgaatgctgatcagttct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
|
|
| T |
29561306 |
aatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaacttatcacttgaatgaacgctgattagttct |
29561221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 29557541 - 29557421
Alignment:
| Q |
92 |
cattggaaacaactcgtcgttgttgatgaggcagcaaaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaactaatcgc |
191 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||| || | |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | | | |
|
|
| T |
29557541 |
cattggaaataactcgtcattgttgatgaagca-cagagtggcaaagcagttttctctttgcattgccatatttcttcaaatgctgag-aaacttagcac |
29557444 |
T |
|
| Q |
192 |
ttgaatgaatgctgatcagttct |
214 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
29557443 |
ttgaatgaatgctgataagttct |
29557421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University