View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_271 (Length: 237)

Name: NF8521A_low_271
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_271
NF8521A_low_271
[»] chr5 (7 HSPs)
chr5 (1-233)||(29013081-29013314)
chr5 (4-188)||(29365815-29365999)
chr5 (60-219)||(24085110-24085269)
chr5 (138-233)||(29014953-29015048)
chr5 (148-204)||(11095406-11095462)
chr5 (155-205)||(10391444-10391494)
chr5 (162-202)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (151-205)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (156-207)||(24193632-24193683)
chr4 (152-205)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (155-205)||(41809163-41809213)
chr2 (156-204)||(787435-787483)
chr2 (149-205)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (152-205)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29013314 - 29013081
Alignment:
Q  1 tggttcataactttcatatagattatggaaaaa-tgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatct 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||    
T  29013314 tggttcataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggtttttattcaatatgctct 29013215  T
Q  100 attgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacact 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013214 attgggttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacact 29013115  T
Q  200 tgtgagttatgaagtacgaatacaaacaccaaac 233  Q
    |||||||||||||||||||| |||||||||||||    
T  29013114 tgtgagttatgaagtacgaacacaaacaccaaac 29013081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 29365999 - 29365815
Alignment:
Q  4 ttcataactttcatatagattatgg-aaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctatt 102  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||| ||||||    
T  29365999 ttcataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagtttttattcaatatgctctatt 29365900  T
Q  103 gggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 188  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  29365899 gggttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgctg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  60 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 159  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  160 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 219  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  138 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 233  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  148 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 204  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  155 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  162 gattggattattgaagcttatctgctggcataaacacttgt 202  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  151 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  156 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 207  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  152 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  155 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  156 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 204  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  149 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  152 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 205  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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