View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_275 (Length: 236)
Name: NF8521A_low_275
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_275 |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 5198694 - 5198496
Alignment:
| Q |
6 |
agtatcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaat |
105 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5198694 |
agtatgatacagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaat |
5198595 |
T |
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| Q |
106 |
ctttattgattaatttcaaattaggaagttagccgttgagttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5198594 |
ctttattgattaatttcaaattaggaagttagccgttga-------ggaattttttttatgaatataataactcaatcaatatgtgtattttatttttct |
5198502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 5177972 - 5178134
Alignment:
| Q |
45 |
catcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttcaaattaggaagttagccgttga |
144 |
Q |
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||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||| |
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| T |
5177972 |
catcaatgaaaattacaacatgttc--gcctagttgcaatgtacacatcatgttctgcaatctttcttgattaatttcgaattaggaggttagccgatga |
5178069 |
T |
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| Q |
145 |
gttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgtgaa |
211 |
Q |
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| T |
5178070 |
gttactttgaaattttttgatgaatataacagctcaatca--atgtgtattttatttttctcgtgaa |
5178134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 5207394 - 5207463
Alignment:
| Q |
6 |
agtatcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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|||||||||||||| |||| || | |||| |||| || ||||| |||||||||||| ||||||||||||| |
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| T |
5207394 |
agtatcatagagttcgtaccctcattttgctctatttcccatcgatgacaattacagcatgttctggcct |
5207463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 14191150 - 14191104
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggccta |
76 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
14191150 |
atttgttctaattctcatcaatgacaattacaacatgttatggccta |
14191104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 35611522 - 35611568
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggccta |
76 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
35611522 |
atttgttctaattctcatcaatgacaattacaacatgttatggccta |
35611568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 27194351 - 27194395
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
27194351 |
atttgttctaatt-ctatcaatgacaattacaacatgttctggcct |
27194395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 27844165 - 27844209
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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|
||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
27844165 |
atttgttctaatt-ctatcaatgacaattacaacatgttctggcct |
27844209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 39441423 - 39441378
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |||||| |
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| T |
39441423 |
atttgttctaattctcatcaatgacaattacagcatgttatggcct |
39441378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 15388 - 15343
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
15388 |
atttgttctaattatcatcgatgacaattacaacatgttatggcct |
15343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 16015376 - 16015331
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
16015376 |
atttgttctaattctcatcaatgacaattacaacatgttctagcct |
16015331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 18344638 - 18344682
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |||||| |
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| T |
18344638 |
atttgttctaatt-ctatcaatgacaattacaacatgttttggcct |
18344682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 617930 - 617886
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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|
||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
617930 |
atttgttctaatt-ctatcaatgacaattacaacatgttctggcct |
617886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 2331046 - 2331091
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
2331046 |
atttgttctaattctcatcaatgacaattacaacatgttttggcct |
2331091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 48233891 - 48233935
Alignment:
| Q |
30 |
atttgttctaattaccatcaatgacaattacaacatgttctggcct |
75 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |||||| |
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| T |
48233891 |
atttgttctaatt-ctatcaatgacaattacaacatgttatggcct |
48233935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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