View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_278 (Length: 235)
Name: NF8521A_low_278
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_278 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 44965519 - 44965305
Alignment:
| Q |
21 |
aacagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcttcggtttccaccggtaaccacggcaatagtttccttggaccaccacctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965519 |
aacagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcctcggtttccaccggtaaccacggcaatagtttccttggaccaccacctt |
44965420 |
T |
|
| Q |
121 |
tatatagaaaagtaacatattaaaatcatgattttaatggattttaatttgttgcaatcaacaatccacacattcacacaatccgtacattggtggtcat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965419 |
tatatagaaaagtaacatattaaaatcatgattttaacggattttaatttgttgcaatcaacaatccacacattcacacaatccgtacattggtggtcat |
44965320 |
T |
|
| Q |
221 |
tgggtcgagatcaag |
235 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
44965319 |
tggatcgaaatcaag |
44965305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 40068807 - 40068703
Alignment:
| Q |
22 |
acagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcttcggtttccaccggtaaccacggcaatagtttccttggaccaccaccttt |
121 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||| ||||| ||||||| || |||||||| |||||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
40068807 |
acagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctat |
40068708 |
T |
|
| Q |
122 |
atata |
126 |
Q |
| |
|
||||| |
|
|
| T |
40068707 |
atata |
40068703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 10898426 - 10898328
Alignment:
| Q |
21 |
aacagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcttcggtttccaccggtaaccacggcaatagtttccttggaccaccacct |
119 |
Q |
| |
|
|||||| | ||||||| | |||||||| || |||||||||| ||||||| || |||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
10898426 |
aacagtcaatccatgagcagcaagttgcctgcaaatctcaaacccaattcctctgtttccaccggtaaccacagcaatagtttctttagaccaccacct |
10898328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University