View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_288 (Length: 230)
Name: NF8521A_low_288
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_288 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 35136797 - 35136593
Alignment:
| Q |
11 |
tcccaaatgaaatagcgatgcacaaatatcttgctcgtcatctcctccaacactgtttatttcttgtcagcatccaaatgtttaccaagcatatttagcg |
110 |
Q |
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| T |
35136797 |
tcccaaatgaaatagcgatgcacaaatatcttgctcgtcatctcctccaacactgtttatttcttgtcagcatccaaatgtttaccaagcatatt-agcg |
35136699 |
T |
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| Q |
111 |
atagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacgacaacctttaggggtgcatgaaagtctatcaagcccggatataagat |
210 |
Q |
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| T |
35136698 |
atagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacgacaacctttaggggtgcatgaaagtctatcaagcccggatgcaagat |
35136599 |
T |
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| Q |
211 |
acgata |
216 |
Q |
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|||||| |
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| T |
35136598 |
acgata |
35136593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 43842410 - 43842478
Alignment:
| Q |
95 |
ccaagcatatttagcgatagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacga |
164 |
Q |
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| T |
43842410 |
ccaagcatatt-agcaacagttatatatgatgtgaccaatgaaagacccatcaatgaagcaacttgacga |
43842478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 35129591 - 35129506
Alignment:
| Q |
34 |
aaatatcttgctcgtcatctcctccaacactgtttatttctt---gtcagcatccaaatgtttaccaagcatatttagcgatagtt |
116 |
Q |
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| T |
35129591 |
aaatatcttgctcatcatctcctccaacagtgttattttcttctcttcagtatccaaatgtttaccaagcattattagcaatagtt |
35129506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 18145526 - 18145594
Alignment:
| Q |
95 |
ccaagcatatttagcgatagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacga |
164 |
Q |
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| T |
18145526 |
ccaagcatatt-agcaatagttatatatgatgtgatcaatgaaagacccatcaatgaagcaacttgacga |
18145594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 18220134 - 18220067
Alignment:
| Q |
96 |
caagcatatttagcgatagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacga |
164 |
Q |
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| T |
18220134 |
caagcatatt-agcaatagttatatatgatgtgatcaatgaaagacccatcaatgaagcaacttgacga |
18220067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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