View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_289 (Length: 230)
Name: NF8521A_low_289
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_289 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32553077 - 32552853
Alignment:
| Q |
1 |
atgcctgggaaatatctttatcccttattctaattcatattaatgttgcaatatccatcgaccttgtttaaggacacttagtcataaacaacacaatatt |
100 |
Q |
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| T |
32553077 |
atgcctgggaaatatctttatcccttattctaattcatattaatgttgcaatatccatcgaccttgtttaaggacacttattcataaacaacacaatatt |
32552978 |
T |
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| Q |
101 |
gaaaaaatctggtgactttatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaa |
200 |
Q |
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| T |
32552977 |
gaaaaaatctggtgactttatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaa |
32552878 |
T |
|
| Q |
201 |
agagattcaaaacaagctctgtgat |
225 |
Q |
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| T |
32552877 |
agagattcaaaacaagctctgtgat |
32552853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 32549723 - 32549539
Alignment:
| Q |
38 |
tattaatgttgcaatatccatcgaccttgtttaaggacacttagtcataaacaacacaatattgaaaaaatctggtgactttatctcaatgaattgtgca |
137 |
Q |
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| T |
32549723 |
tattaatgttgcaacattcatcgaccttctttaacgacacttggtcataaacaacgtaatattgaaaacatatggtgactttaactccatgaattgtgcg |
32549624 |
T |
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| Q |
138 |
attagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaacaagctctgt |
222 |
Q |
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| T |
32549623 |
atttgctttgcaaaccttgagaacaattcatccatgatatcttcaccaaactgagctattaaaatagattccaaaaaagctctgt |
32549539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 32547259 - 32547153
Alignment:
| Q |
119 |
tatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaacaagct |
218 |
Q |
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||||||||||| ||| || || |||||||||||||||||||| ||||||||||||| ||||| |||||| | ||||||||||||| |||| || |||| |
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| T |
32547259 |
tatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttctccaaacccggctattaaaagaggttcataaacagct |
32547160 |
T |
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| Q |
219 |
ctgtgat |
225 |
Q |
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||||||| |
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| T |
32547159 |
ctgtgat |
32547153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 32647998 - 32648104
Alignment:
| Q |
119 |
tatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaacaagct |
218 |
Q |
| |
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||||||||||| ||| || || |||||||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||| |||| || |||| |
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| T |
32647998 |
tatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccataatgttttctccaaatccagctattaaaagaggttcataaacagct |
32648097 |
T |
|
| Q |
219 |
ctgtgat |
225 |
Q |
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||||||| |
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| T |
32648098 |
ctgtgat |
32648104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 27879256 - 27879155
Alignment:
| Q |
122 |
ctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaacaagctctg |
221 |
Q |
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|||||||| ||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| | |||||||||||| ||||||| ||||||| |
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| T |
27879256 |
ctcaatgagctgtgcaagcagctttgcaaatcttgagaacaattcatccatgatattttcaccaaacccgtctattaaaagaggttcaaaaacagctctg |
27879157 |
T |
|
| Q |
222 |
tg |
223 |
Q |
| |
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|| |
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|
| T |
27879156 |
tg |
27879155 |
T |
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