View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_294 (Length: 230)
Name: NF8521A_low_294
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_294 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3990862 - 3991085
Alignment:
| Q |
1 |
atagcggaattagcaacaatctatcccaacgtgaaaattctccactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgtttt |
100 |
Q |
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| T |
3990862 |
atagcggaattagcaacaatctatcccaacgtgaaaattctccactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgtttt |
3990961 |
T |
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| Q |
101 |
ttctcttgcattggatgactatctgcaaactaatattcttctttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctctt |
200 |
Q |
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| T |
3990962 |
ttctcttgcattggatgactatctgcaaactaatattcttctttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctctt |
3991061 |
T |
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| Q |
201 |
agcagaagttgcaggattaccaac |
224 |
Q |
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| T |
3991062 |
agcagaagtggcaggattaccaac |
3991085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 17936062 - 17935987
Alignment:
| Q |
150 |
gtttcaacttaaggaaggaccgaaacatatcccccattatggccttctcttagcagaagttgcaggattaccaact |
225 |
Q |
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| T |
17936062 |
gtttcaacttaaggagtgaccgaaacatagcccccattatggccttctcttcgcataagtgaaaggattaccaact |
17935987 |
T |
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