View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_298 (Length: 229)
Name: NF8521A_low_298
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_298 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43595448 - 43595225
Alignment:
| Q |
1 |
acaacaaattaattactaattctatgcataatctgactttttt-acaagatacaaggggactatagttatcaaaatgggtttggtccaatatgactatag |
99 |
Q |
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| T |
43595448 |
acaacaaattaattactaattctatgcataatctgactttttttacaagatacaaggggactatagttatcaaaatgggtttggtccaatatgactatag |
43595349 |
T |
|
| Q |
100 |
tttagggtcacctgaaccactgatttcactttgtttaagcctccacccagtttcacattaacaacaaatatgagagagcgtttccatttgtgaatcactc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43595348 |
tttagggtcacctgaaccactgatttcactttgtttaagcctccactcagtttcacattaacaacaaatatgagagagcgtttccatttgtgaatcactc |
43595249 |
T |
|
| Q |
200 |
tcctacgactgtgtttctgcaaac |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
43595248 |
tcctacgactgtgtttctgcaaac |
43595225 |
T |
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