View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_301 (Length: 229)
Name: NF8521A_low_301
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_301 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 51254302 - 51254497
Alignment:
| Q |
21 |
actctcactacatttctagggttaccgttaagacaatccacgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccat |
120 |
Q |
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| T |
51254302 |
actctcactacatttctagggttaccgttaagacaatccacgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccat |
51254401 |
T |
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| Q |
121 |
gcaactgttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctca |
216 |
Q |
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| T |
51254402 |
gcgactgttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctca |
51254497 |
T |
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Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 11764 - 11835
Alignment:
| Q |
146 |
aacctctctcttcctccacactatcacctacagagccatcaaccg-tcgtttctgcacaaactgcgttctca |
216 |
Q |
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|||||||||| |||||||| | |||||| ||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
11764 |
aacctctctcatcctccacgccatcaccaacagagccatcaaatgttcgtttctgcacaaattgcgttctca |
11835 |
T |
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