View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_306 (Length: 229)
Name: NF8521A_low_306
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_306 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 10010474 - 10010331
Alignment:
| Q |
1 |
aaaattgaaaaatgtaacaagaaaatggtgcataccaatgtactaatttgtacaaaacaannnnnnnnnnnnngtggctctacaatgttgcagaaaaagg |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
10010474 |
aaaattgaaaaatgtaaaaa-aaaatggtgcataccaatgtactaatttgtacaaaacaa---ttttttttgtgtggctctacaatgttgcagaaagaga |
10010379 |
T |
|
| Q |
101 |
gtgaaagagacactaaaatgttctttcccaacaataataaaaattgtaag |
150 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10010378 |
gtg--acagacactaaaatgttctttcccaataatagtaaaaattgtaag |
10010331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 10010337 - 10010287
Alignment:
| Q |
171 |
ttgtaagttatgaaagtggaagaatgtgctatgctatataaagagtatgatat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10010337 |
ttgtaagttatgaaagtggaagaatgtgctatgctatat--agagtatgatat |
10010287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University