View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_312 (Length: 227)
Name: NF8521A_low_312
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_312 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13293336 - 13293555
Alignment:
| Q |
1 |
aatgcagcgcctcccaatatcgctagctccatctcttccaaaccctcaaagctcttcaccaagttttcattcctcctcggatcacgtgggaacaaatgca |
100 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13293336 |
aatgcagcgcctcccaatctcactcgctccatcgcttccaaaccctcaaagctcttcaccaagttttcactcctcctcggatcacgtgggaacaaatgca |
13293435 |
T |
|
| Q |
101 |
gacatgcacagtgcctctaacatgtccatgcattttgatcctcatcagccactttcatcattggacttgagcagcttcttcaatcaatcagatcaacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13293436 |
gacatgcacagtgcctctaacatgtccatgcattttgatcctcatcagccactttcatcattggacttgagcagcttcttcaatcaatcagatcaacaac |
13293535 |
T |
|
| Q |
201 |
ttgatgatgatgaactccaa |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13293536 |
ttgatgatgatgaactccaa |
13293555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University