View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_314 (Length: 227)
Name: NF8521A_low_314
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_314 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 6306693 - 6306903
Alignment:
| Q |
14 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
113 |
Q |
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| T |
6306693 |
gaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaattag |
6306792 |
T |
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| Q |
114 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttcagaaatatgaagcagaatggaagagtaagaagaagaagggattcagttg |
213 |
Q |
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| T |
6306793 |
cgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatatgaagaagaatggaagagtaagaagaagaagggaatcagttg |
6306892 |
T |
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| Q |
214 |
cagagaagaga |
224 |
Q |
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| T |
6306893 |
cagagaagaga |
6306903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 33809090 - 33809289
Alignment:
| Q |
25 |
ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct |
124 |
Q |
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| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
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| Q |
125 |
tcaggtcgagaagtgatactgaatgagtttgcttcggttcagaaatatgaagcagaatggaagagtaagaagaagaagggattcagttgcagagaagaga |
224 |
Q |
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| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcgattaagaaatatgaagaagaatggaagagtaagaagaagaagggaatcagttgcagagaagaga |
33809289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 44257488 - 44257456
Alignment:
| Q |
14 |
gaacacatgacataattaacaagaagctaaacc |
46 |
Q |
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| T |
44257488 |
gaacacatgacataattaataagaagctaaacc |
44257456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 39538896 - 39539103
Alignment:
| Q |
16 |
acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
115 |
Q |
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| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
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| Q |
116 |
acggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttcagaaatatgaagcagaatggaagagtaagaagaagaagggattcagttgca |
215 |
Q |
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| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttcaattaagaaatatgaa-aagaatggaagagtatgaagaagaagagaatcagttgca |
39539094 |
T |
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| Q |
216 |
gagaagaga |
224 |
Q |
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| T |
39539095 |
gagaagaga |
39539103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 20627 - 20815
Alignment:
| Q |
14 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
113 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |
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| T |
20627 |
gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag |
20726 |
T |
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| Q |
114 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttcagaaatatgaagcagaatggaagagtaagaagaagaag |
202 |
Q |
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| T |
20727 |
cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcgattaagaaacatgaagaagaatggaagagcgtgaagaagaag |
20815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20809 - 20857
Alignment:
| Q |
173 |
gaagcagaatggaagagtaagaagaagaagggattcagttgcagagaag |
221 |
Q |
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| T |
20809 |
gaagaagaagggaagagtatgaagaagaagggaatcagttgcagagaag |
20857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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