View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_318 (Length: 226)
Name: NF8521A_low_318
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_318 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 33430392 - 33430554
Alignment:
| Q |
49 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
148 |
Q |
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| T |
33430392 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
33430491 |
T |
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| Q |
149 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctc |
211 |
Q |
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| T |
33430492 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctc |
33430554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 33435274 - 33435333
Alignment:
| Q |
152 |
tatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctc |
211 |
Q |
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| T |
33435274 |
tatcactaagctatggagaagaaaacactagcaggcttatgcttcctcttcctcgttctc |
33435333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 11127657 - 11127604
Alignment:
| Q |
158 |
taagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctc |
211 |
Q |
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| T |
11127657 |
taagccatggaaaagaaatcactagttgtcttgtgcttcctcttcctcgttctc |
11127604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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