View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_325 (Length: 223)

Name: NF8521A_low_325
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_325
NF8521A_low_325
[»] chr3 (6 HSPs)
chr3 (23-201)||(46997753-46997931)
chr3 (23-195)||(47001416-47001589)
chr3 (23-201)||(46995493-46995671)
chr3 (23-201)||(46980679-46980857)
chr3 (23-201)||(46974690-46974868)
chr3 (28-201)||(46951256-46951429)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 46997753 - 46997931
Alignment:
Q  23 gaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46997753 gaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaat 46997852  T
Q  123 aggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46997853 aggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggctgatgattggaccataaccttctggaaac 46997931  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 47001416 - 47001589
Alignment:
Q  23 gaaaagaagagattttgtttgtatcagactctttgttagcttttgc-tttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaa 121  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||     
T  47001416 gaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagactctgctgaaaaatggaatatcctctctctcaaag 47001515  T
Q  122 taggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttct 195  Q
    |||||| || |||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  47001516 taggtgcttgatatctgtgaataaactcgtcgtgatgtttgaaaggaaggttgatagttggaccataaccttct 47001589  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 46995493 - 46995671
Alignment:
Q  23 gaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaat 122  Q
    |||| |||||||||||  |||| ||  |||||||||| || |||||||| ||||| || ||| |||||||||||||||| || |||||||||||||||||    
T  46995493 gaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaactctgctgaaaaatggaagattctctctctcaaaat 46995592  T
Q  123 aggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac 201  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  46995593 aggtgcttcatatctatgaataaactcgtcgtgatgtttgaaaggaaggttgataattggaccatagccttcaggaaac 46995671  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 46980679 - 46980857
Alignment:
Q  23 gaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaat 122  Q
    |||| ||||| ||||||||||||| |||||||   || || |||||||||||||| || ||||| ||  |||||||||| || ||||||||||| |||||    
T  46980679 gaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagattccactgaaaaatggaagattctctctcttaaaat 46980778  T
Q  123 aggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac 201  Q
     |||||||||||||| |||| |||||| |  ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  46980779 gggtgtttcatatctgtgaacaaactcatggtgatgtttgaatggaaggttgataattggaccataaccttgtggaaac 46980857  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 46974690 - 46974868
Alignment:
Q  23 gaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaat 122  Q
    |||| ||||| |||||  |||||| ||||||||  || || |||||||| ||||||   |||||||| ||||||||||| || ||||||||||| |||||    
T  46974690 gaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctgaaaaatggaagattctctctcttaaaat 46974789  T
Q  123 aggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac 201  Q
     | |||||||||||| |||| |||||| || ||||||||||| ||||||||||| || ||||||||||||| |||||||    
T  46974790 ggatgtttcatatctgtgaacaaactcctcgtgatgtttgaatggaaggttgataatcggaccataaccttgtggaaac 46974868  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 46951256 - 46951429
Alignment:
Q  28 gaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtg 127  Q
    ||||||||||||||||||| ||||||  | || || || ||||| |  || |||||||||||||||| |||||| || | |||||||||||   | ||||    
T  46951256 gaagagattttgtttgtattagactccatattggccttagctttcaactttgcaatagactctgctgtaaaatggaagaatctctctctcagcttgggtg 46951355  T
Q  128 tttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac 201  Q
     |||||| |||   |||| |||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||    
T  46951356 gttcatacctagttataatctcgtcatgatgtttgaatggaagattgatcagtggaccataaccttctggaaac 46951429  T

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