View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_low_328 (Length: 222)
Name: NF8521A_low_328
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_328 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10529222 - 10529434
Alignment:
| Q |
1 |
aatgtcatgttgggtgtgttgttgggaaaatattttcctttaacaaatgaactcgaaaggtcaacttaggattcaagttagattctttaaaggtttctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10529222 |
aatgtcatgttgggtgtgttgttgggaaaatattttcctttaacaaatgaactcgaaaggtcaacttaggattcaagttagattctttaaaggtttctaa |
10529321 |
T |
|
| Q |
101 |
ttgataggtttaaggttacaagcgcacaatcatggatcaaagaaatgcagggacttgaaatggtaaagaaagaagaaagaaaaacaaaggcacaaagtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10529322 |
ttgataggtttaaggttacaagcgcacaatcatggatcaaagaaatgcagggacttgaaatggta-------aagaaagaaaaacaaaggcacaaagtgt |
10529414 |
T |
|
| Q |
201 |
gcataagagaaatatatata |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10529415 |
gcataagagaaatatatata |
10529434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10536083 - 10536303
Alignment:
| Q |
1 |
aatgtcatgttgggtgtgttgttgggaaaatattttcctttaacaaatgaactcgaaaggtcaacttaggattcaagttagattctttaaaggtttctaa |
100 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
10536083 |
aatgtcctgttgggcgtgttgtccggaaaatattttcctttaacaaatgaacttgataggtcaacataggattcgagttagattcttaaaaggtttctaa |
10536182 |
T |
|
| Q |
101 |
ttgataggtttaaggttacaagcgcacaatcatggatcaaagaaatgcagggacttgaaatggt-------aaagaaagaagaaagaaaaacaaaggcac |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
10536183 |
ttgataggttcaaggttacaagcgcacaatcatggatcaaagaaatgtaaggacttgaaatggtaaagtaaaaagaaaaaagaaagaaaaacaaaggcac |
10536282 |
T |
|
| Q |
194 |
aaagtgtgcataagagaaata |
214 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10536283 |
aaagtgtgcataagagaaata |
10536303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 2221355 - 2221426
Alignment:
| Q |
42 |
aacaaatgaactcgaaaggtcaacttaggattcaagttagattctttaaaggtttctaattgataggtttaa |
113 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||||||||||| | ||||| ||||||||| |||||| |
|
|
| T |
2221355 |
aacaaatgaactcgaaaaatcaatctaagattcaagttagattcttaagaggttcttaattgatatgtttaa |
2221426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University