View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_332 (Length: 222)

Name: NF8521A_low_332
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_332
NF8521A_low_332
[»] chr7 (17 HSPs)
chr7 (1-136)||(4653684-4653819)
chr7 (2-136)||(4864087-4864221)
chr7 (1-130)||(4631091-4631220)
chr7 (3-130)||(4663157-4663284)
chr7 (1-136)||(4672867-4673002)
chr7 (1-136)||(4696986-4697121)
chr7 (1-130)||(4643871-4644000)
chr7 (1-130)||(4845814-4845946)
chr7 (156-222)||(4637767-4637833)
chr7 (156-222)||(4654409-4654475)
chr7 (2-136)||(4667103-4667240)
chr7 (156-222)||(4711200-4711266)
chr7 (1-130)||(4711874-4712006)
chr7 (161-221)||(4782949-4783009)
chr7 (161-221)||(4815378-4815438)
chr7 (184-222)||(4845128-4845166)
chr7 (166-222)||(4696297-4696353)
[»] chr4 (1 HSPs)
chr4 (2-130)||(18925544-18925672)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4653684 - 4653819
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653684 gcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 4653783  T
Q  101 gaggaaaatcgctatcccaattacgaaacaaaccag 136  Q
    ||||| ||||| ||||||||||||||||||||||||    
T  4653784 gaggataatcgttatcccaattacgaaacaaaccag 4653819  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 4864087 - 4864221
Alignment:
Q  2 cttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaacg 101  Q
    ||||||||||| |||||||| |||| || ||||||| |||||| ||||||| |  ||||||||||||||  ||| |||||||||||||||| ||||||||    
T  4864087 cttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgtttaaaatcacttgatatgctttgtggatattgtttctccaagtaacg 4864186  T
Q  102 aggaaaatcgctatcccaattacgaaacaaaccag 136  Q
    |||||||||  | |||||||||||||||| |||||    
T  4864187 aggaaaatcattgtcccaattacgaaacataccag 4864221  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4631091 - 4631220
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 100  Q
    |||||||||||| ||||||||| ||| |||||||||  |||||| ||||||| | |||||| |||||||||||| |||||||||| |||||| |||||||    
T  4631091 gcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgatgtccaaaataacttgatacactaagtggatattctttctccaagtaac 4631190  T
Q  101 gaggaaaatcgctatcccaattacgaaaca 130  Q
    ||||||||||  | |||||||| |||||||    
T  4631191 gaggaaaatcattgtcccaattgcgaaaca 4631220  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 4663157 - 4663284
Alignment:
Q  3 ttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaacga 102  Q
    |||||||||| ||||||||||||| |||||||||  |||||| ||||||| | |||||||||||||||||||| ||||||||| | |||| |||||||||    
T  4663157 ttctggtgcagtgtaatttggaatggtattgtttaaatagtttagatgatctccaaaatcacttgatacactttgtggatattctatctccaagtaacga 4663256  T
Q  103 ggaaaatcgctatcccaattacgaaaca 130  Q
    ||| ||||  | ||||||| ||||||||    
T  4663257 ggagaatcattttcccaataacgaaaca 4663284  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4672867 - 4673002
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 100  Q
    |||||||||||| ||||||||||||| |||||||||  | ||||||||||||  | | | |||||||||||||| ||||||||||||||||| |||||||    
T  4672867 gcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgatgcatatactcacttgatacactaagtggatattgtttctccaagtaac 4672966  T
Q  101 gaggaaaatcgctatcccaattacgaaacaaaccag 136  Q
     | |||||||  | |||||||||||||||| |||||    
T  4672967 catgaaaatcattgtcccaattacgaaacataccag 4673002  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 4697121 - 4696986
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 100  Q
    |||||||||||| |||||||| |||| || ||||||| |||||| ||||||| |  ||||||||||||||  ||| |||||||||||||||| |||||||    
T  4697121 gcttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgtttaaaatcacttgatatgctttgtggatattgtttctccaagtaac 4697022  T
Q  101 gaggaaaatcgctatcccaattacgaaacaaaccag 136  Q
    ||||||||||  | ||||| |||||||||| |||||    
T  4697021 gaggaaaatcattgtcccagttacgaaacataccag 4696986  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4643871 - 4644000
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaac 100  Q
    |||||||||||| ||||||||||||| | ||| |||  |||||| ||||||| | || ||||| ||||||| ||||| |||||||||||||| |||||||    
T  4643871 gcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgatgttcataatcatttgatacgcttagcggatattgtttctccaagtaac 4643970  T
Q  101 gaggaaaatcgctatcccaattacgaaaca 130  Q
    ||||| ||||  | ||||||||||||||||    
T  4643971 gaggataatcattgtcccaattacgaaaca 4644000  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4845946 - 4845814
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcacttgatacacttagtggatattgtttctctaagt 97  Q
    |||||||||||| ||||||||||||| |||||||||  |||||| |||||||   || || ||  |||||||||||| |||||||||| |||||| ||||    
T  4845946 gcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaaaacttgatacactaagtggatattctttctccaagt 4845847  T
Q  98 aacgaggaaaatcgctatcccaattacgaaaca 130  Q
    |||||||||||||  | |||||||| |||||||    
T  4845846 aacgaggaaaatcattgtcccaattgcgaaaca 4845814  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 4637767 - 4637833
Alignment:
Q  156 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgag 222  Q
    |||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4637767 atctaaggcagtattgtcggttaaggagccacaattgatggctaaattgtaatcagggttgtatgag 4637833  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 4654409 - 4654475
Alignment:
Q  156 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgag 222  Q
    |||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  4654409 atctaaggtagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatgag 4654475  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 4667103 - 4667240
Alignment:
Q  2 cttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatt---tacaaaatcacttgatacacttagtggatattgtttctctaagta 98  Q
    ||||||||||| ||||||||||||| ||||| | |  ||||||  ||||||    | |||||| ||||||||  ||| |||||||||||||||| |||||    
T  4667103 cttctggtgcagtgtaatttggaatagtattttgtaaatagtttggatgatcaggtccaaaataacttgatatgctttgtggatattgtttctccaagta 4667202  T
Q  99 acgaggaaaatcgctatcccaattacgaaacaaaccag 136  Q
    ||||||||||||  | |||||||||||||||| |||||    
T  4667203 acgaggaaaatcattgtcccaattacgaaacataccag 4667240  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 4711266 - 4711200
Alignment:
Q  156 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgag 222  Q
    |||| |||||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||||    
T  4711266 atctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgag 4711200  T

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Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4712006 - 4711874
Alignment:
Q  1 gcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcacttgatacacttagtggatattgtttctctaagt 97  Q
    |||||||||||| ||||||| ||||| |||||||||  ||||||  ||||||   || || || || ||||||||||| ||||||||| ||| || | ||    
T  4712006 gcttctggtgcagtgtaattgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggt 4711907  T
Q  98 aacgaggaaaatcgctatcccaattacgaaaca 130  Q
    || |||||||||| || ||||||||||||||||    
T  4711906 aaagaggaaaatcactgtcccaattacgaaaca 4711874  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 4783009 - 4782949
Alignment:
Q  161 aggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatga 221  Q
    |||||||||||| ||||  |||||||||| ||||||||||| |||||||||||||||||||    
T  4783009 aggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga 4782949  T

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Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 4815438 - 4815378
Alignment:
Q  161 aggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatga 221  Q
    |||||||||||| ||||  |||||||||| ||||||||||| |||||||||||||||||||    
T  4815438 aggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga 4815378  T

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Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 4845166 - 4845128
Alignment:
Q  184 ccacaattgatggctaaattgtaatcagggttgtatgag 222  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4845166 ccacaattgatggctaaattgtaatcagggttgtatgag 4845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 4696353 - 4696297
Alignment:
Q  166 gtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgag 222  Q
    |||||||||| |  ||||||||||||||||||||||||||||  ||||| |||||||    
T  4696353 gtagtgtctgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgag 4696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 18925672 - 18925544
Alignment:
Q  2 cttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaacg 101  Q
    ||||||||||  |||| |||||||| ||||||||| |||||||||||| || |  ||||||| |||||||||||||||||||||||||||| ||||||||    
T  18925672 cttctggtgccgtgtagtttggaatggtattgtttatatagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacg 18925573  T
Q  102 aggaaaatcgctatcccaattacgaaaca 130  Q
    |||||||||| | ||||||| ||||||||    
T  18925572 aggaaaatcgttgtcccaataacgaaaca 18925544  T

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