View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_34 (Length: 417)
Name: NF8521A_low_34
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 43596140 - 43595775
Alignment:
| Q |
15 |
atgaataaggtttattggtcaactatttgtattatgtatgtgggaaatattgacagctttaagagatttactgatatttatgcgtttgtaacattattga |
114 |
Q |
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| T |
43596140 |
atgaataaggtttattggtcaactatttgtattatgtatgtgggaaatattgacagctttaagagatttactgatatttatgcgtttgtaacattattga |
43596041 |
T |
|
| Q |
115 |
gttttaatgtatgttgtggtcaatgctcgaaattgttgtattttgtaatttattttacgagtttatgcatgtataccaaaattgccaaatctactaaaga |
214 |
Q |
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| T |
43596040 |
gttttaatgtatgttgtggtcaatgctcgaaattgttttattttgtaatttattttacgagtttatgcatgtataccaagatcaccaaatctactaaaga |
43595941 |
T |
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| Q |
215 |
tgtttgtttattaatgttcattgtgctagttgttttaatttccccaataaattaacaaatctggagcttgttataatttcataaaggtgatattacacac |
314 |
Q |
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| T |
43595940 |
tgtttgtttattaatgttcattgtgctagttgttttaatttccccaataaattaacaaatctggagcttgttataatttcataaaggtgatattacacac |
43595841 |
T |
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| Q |
315 |
tttttacccacaaagttttcatcttcgtatgtttgattcttaaattaaaggcaacaaaaaataaga |
380 |
Q |
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| T |
43595840 |
tttttacccacaaagttttcatcttcgtatgtttgattcttaaattaaaggcaacaaaaaataaga |
43595775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 276
Target Start/End: Complemental strand, 48155728 - 48155473
Alignment:
| Q |
24 |
gtttattggtcaactatttgtattatgtatgtgggaaatattgacagctttaa----gagatttactgatatttatgcgtttgtaacattattgagtttt |
119 |
Q |
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| T |
48155728 |
gtttattggtcaactatttgtagtatgtttgttgggcatgttgacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagttct |
48155629 |
T |
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| Q |
120 |
aatgtatgttgtggtcaatgctcgaaattgttgtattttgtaatttattttacgagtttatgcatgtataccaaaattgccaaatctactaaagatgttt |
219 |
Q |
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||||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||||| || ||| |||||||| |||||| || || |
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| T |
48155628 |
aatgtatgttgtggtcattgcttgaaattgttttattttttaatttatttt--gagtttatgcatgttggtcaggattaccaaatctgctaaaggtggtt |
48155531 |
T |
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| Q |
220 |
gt-ttattaatgttcattgtgctagttgttttaatttccccaataaattaacaaatct |
276 |
Q |
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| T |
48155530 |
gtcttattaatgttaactgtgctagttgttttaattaccccaacaaattgtcaaatct |
48155473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 48147013 - 48146924
Alignment:
| Q |
89 |
tatttatgcgtttgtaacattattgagttttaatgtatgttgtggtcaatgctcgaaattgttgtattttgtaatttattttacgagttt |
178 |
Q |
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| T |
48147013 |
tatttatgcatgtgtaactggattgagttctaatgtatgttgtggtcactgcctgaaattgttctatattgtaatttattttatgagttt |
48146924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 45371220 - 45371144
Alignment:
| Q |
110 |
attgagttttaatgtatgttgtggtcaatgctcgaaattgttgtattttgtaatttattttacgagtttatgcatgt |
186 |
Q |
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| T |
45371220 |
attgagttctaatgtatgttgtgatcactgttagaaattgttttataatgtaatttattttatgaatttatgcatgt |
45371144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 48170332 - 48170181
Alignment:
| Q |
24 |
gtttattggtcaactatttgtattatgtatgtgggaaatattgacagctttaa----gagatttactgatatttatgcgtttgtaacattattgagtttt |
119 |
Q |
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|||||||||||||||||||||| ||||| ||| |||| |||| |||||| | |||| |||| ||||||||| | |||||| ||||||| | |
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| T |
48170332 |
gtttattggtcaactatttgtagtatgtttgtttgaaaggttgatagctttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgct |
48170233 |
T |
|
| Q |
120 |
aatgtatgttgtggtcaatgctcgaaattgttgtattttgtaatttatttta |
171 |
Q |
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| T |
48170232 |
aatgtatgttgtggtcactgctagaaattgtattatattgtaatttgtttta |
48170181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 48160531 - 48160445
Alignment:
| Q |
144 |
aaattgttgtattttgtaatttattttacgagtttatgcatgtataccaaaattgccaaatctactaaagatgtttgt-ttattaat |
229 |
Q |
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| T |
48160531 |
aaattgttttatattgtaattaatttgatgagtttatgcatgttgatcaagattaccaaatctgctaaaggtgtttgtcttattaat |
48160445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 48169823 - 48169722
Alignment:
| Q |
160 |
taatttattttacgagtttatgcatgtataccaaaattgccaaatctactaaagatgtttgt-ttattaatgttcattgtgctagttgttttaatttccc |
258 |
Q |
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| T |
48169823 |
taatttattttatgagtttatgcatgttgat-aaaattgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgctagttgttttaatttccc |
48169725 |
T |
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| Q |
259 |
caa |
261 |
Q |
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||| |
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| T |
48169724 |
caa |
48169722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 14197302 - 14197213
Alignment:
| Q |
124 |
tatgttgtggtcaatgctcgaaattgttgtattttgtaatttattttacgagtttatgcatgtataccaaaattgccaaatctactaaag |
213 |
Q |
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|||| |||||||| |||| |||||||| ||| |||||||| |||| | |||||||||||||| | ||| ||| |||||||| |||||| |
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| T |
14197302 |
tatgatgtggtcactgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagattaccaaatctgctaaag |
14197213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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