View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_342 (Length: 220)
Name: NF8521A_low_342
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_342 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13768174 - 13767976
Alignment:
| Q |
1 |
ctgtcatcgtctgttagtaaattggaaaaatgagattcatgttgcatttgttggcttcaattttgttttcaattgatatgtcattacaccatgctctcat |
100 |
Q |
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| T |
13768174 |
ctgtcatcgtctgttagtaaattggaaaaatgagattcatgttgcatttgttggcttcaattttgttttcaattgatatgtcat---------------- |
13768091 |
T |
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| Q |
101 |
gtaattacaccgtattacatgccttaaagatttgcatcctgttgatagttttttgctgattatttattgctggtagctcttctgttattgttcttccttt |
200 |
Q |
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| T |
13768090 |
-----tacaccgtattacatgccttaaagatttgcatcctgttgatagttttttgctgattatttattgctggtagctcttctgttattgttcttccttt |
13767996 |
T |
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