View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_351 (Length: 216)
Name: NF8521A_low_351
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_351 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 6610066 - 6609897
Alignment:
| Q |
24 |
tctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtt |
123 |
Q |
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| T |
6610066 |
tctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtt |
6609967 |
T |
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| Q |
124 |
tcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactcca |
193 |
Q |
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| T |
6609966 |
tcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactcca |
6609897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 6602465 - 6602378
Alignment:
| Q |
110 |
ttgtcatcatagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttg |
197 |
Q |
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| T |
6602465 |
ttgtcaacatagtttcagctcatggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgtgtttcttactccacttg |
6602378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6602518 - 6602462
Alignment:
| Q |
24 |
tctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgt |
80 |
Q |
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| T |
6602518 |
tctataaattgtttcagcttacaacttattgtcacacaaagttctaattaagtttgt |
6602462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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