View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_364 (Length: 207)

Name: NF8521A_low_364
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_364
NF8521A_low_364
[»] chr2 (11 HSPs)
chr2 (55-136)||(7542155-7542236)
chr2 (55-136)||(12245564-12245645)
chr2 (58-132)||(14703341-14703415)
chr2 (55-136)||(11999336-11999417)
chr2 (55-136)||(12234618-12234699)
chr2 (139-186)||(7542062-7542109)
chr2 (139-186)||(12234525-12234572)
chr2 (139-186)||(14703244-14703291)
chr2 (139-186)||(16662277-16662324)
chr2 (55-136)||(12258739-12258820)
chr2 (55-136)||(16657675-16657756)
[»] chr1 (2 HSPs)
chr1 (87-136)||(52549211-52549260)
chr1 (139-186)||(52549297-52549344)
[»] chr4 (2 HSPs)
chr4 (64-136)||(35132386-35132458)
chr4 (139-175)||(30775099-30775135)
[»] chr7 (3 HSPs)
chr7 (139-186)||(8616517-8616564)
chr7 (139-178)||(8659207-8659246)
chr7 (139-175)||(8585991-8586027)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 7542236 - 7542155
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    |||||||| |||||||||||||||||| |||| |||||| ||||||||||| ||||||| ||||||||||| ||||||||||    
T  7542236 ttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctt 7542155  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 12245564 - 12245645
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||| ||  ||||||| || |||||||| ||||||||||    
T  12245564 ttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctt 12245645  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 14703415 - 14703341
Alignment:
Q  58 aggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagat 132  Q
    ||||| |||||||| ||||| ||| |||| ||||||||||||||||||   ||||||||||||||||| ||||||    
T  14703415 aggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagat 14703341  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 11999417 - 11999336
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    |||||||| |||||||||||||||||| |||| ||||||| ||| || ||  ||||||| || |||||||| ||||||||||    
T  11999417 ttgaggaggttgagaactgcttgtgagagggcaaaaagaatactatcatttcttgttgttgcaactattgaggtagattctt 11999336  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 12234699 - 12234618
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    |||||||| || ||||||||||||||| |||| |||||| || | |||||| ||||||| || || ||||| ||||||||||    
T  12234699 ttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggtagattctt 12234618  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 7542109 - 7542062
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    ||||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  7542109 ttgaggagatgaatatggatctttttaacgagtgtatgacgattgttg 7542062  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 12234572 - 12234525
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||||    
T  12234572 ttgaggaaatgaatatggatcttcttattgagtgtatgaagattgttg 12234525  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 14703291 - 14703244
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    |||| ||||||||||||||| ||||||| |||||| ||||||||||||    
T  14703291 ttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttg 14703244  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 16662277 - 16662324
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  16662277 ttgaagaaatcaatatgggcctttttaacgagtgtatgaagattgttg 16662324  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 12258739 - 12258820
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    ||||||||||||| ||| ||||||||| | || |||||| |||||||||   ||||||| || ||||||||  |||||||||    
T  12258739 ttgaggagattgaaaacagcttgtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctt 12258820  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 16657675 - 16657756
Alignment:
Q  55 ttgaggagattgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    |||||||| ||||||||||| |||||| |||| || || ||||| ||||| | | ||||| ||||| |||| ||||||||||    
T  16657675 ttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctt 16657756  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 52549211 - 52549260
Alignment:
Q  87 caaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549211 caaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 52549260  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 52549297 - 52549344
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549297 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 52549344  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 35132458 - 35132386
Alignment:
Q  64 ttgagaactgcttgtgagggggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 136  Q
    ||||||||||| ||  || |||| || ||| ||||||||||| ||||||| |||| |||||||||||||||||    
T  35132458 ttgagaactgcctgctagagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctt 35132386  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 30775135 - 30775099
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtat 175  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  30775135 ttgaggaaatcaatatggacctttttaatgagtgtat 30775099  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 8616564 - 8616517
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 186  Q
    |||||||||| ||||||||||||||||| |||||||| |||| |||||    
T  8616564 ttgaggaaatcaatatggacctttttaacgagtgtataaagactgttg 8616517  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 8659246 - 8659207
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtatgaa 178  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  8659246 ttgaggaaatgaatatggatctttttaatgagtgtatgaa 8659207  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 8585991 - 8586027
Alignment:
Q  139 ttgaggaaatgaatatggacctttttaaggagtgtat 175  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  8585991 ttgaggaaatcaatatggacctttttaatgagtgtat 8586027  T

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