View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_366 (Length: 206)
Name: NF8521A_low_366
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_366 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 24546261 - 24546466
Alignment:
| Q |
1 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaac |
100 |
Q |
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| T |
24546261 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaac |
24546360 |
T |
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| Q |
101 |
ccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaa |
200 |
Q |
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| T |
24546361 |
ccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaa |
24546460 |
T |
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| Q |
201 |
tgaaga |
206 |
Q |
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|||||| |
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| T |
24546461 |
tgaaga |
24546466 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 24538936 - 24539033
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattc |
147 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattc |
24539033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 583 - 411
Alignment:
| Q |
34 |
aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttcca |
133 |
Q |
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| T |
583 |
aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca |
484 |
T |
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| Q |
134 |
taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaaga |
206 |
Q |
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| T |
483 |
taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatgaaga |
411 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
114 |
Q |
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| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
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