View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_367 (Length: 206)
Name: NF8521A_low_367
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_367 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 31404467 - 31404627
Alignment:
| Q |
26 |
atactataacataaatttctgcatagtcaaaaacaataggagtaatatttagaatatacaattcagtacttttctgttaactc-aaaacaatattctaca |
124 |
Q |
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| T |
31404467 |
atactataacataaatttctgcatagtcaaaaacaataggagtaatatttagaatatacaa-tcagtacttttcttttaactcaaaaacaatattctaca |
31404565 |
T |
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| Q |
125 |
aatgtcacatcttgagatgaactaaaactcatggcatgagcatgagtgccgccttcaaagttagttat |
192 |
Q |
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| T |
31404566 |
aatgtcacatcttgagatgaactaaaactcatg------gcatgagtgccgccttcaaagttagttat |
31404627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 31383839 - 31383873
Alignment:
| Q |
29 |
ctataacataaatttctgcatagtcaaaaacaata |
63 |
Q |
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| T |
31383839 |
ctataacataaatttctgcatagtcaaaaagaata |
31383873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 33621424 - 33621583
Alignment:
| Q |
26 |
atactataacataaatttctgcatagtcaaaaacaataggagtaatatttagaatatacaattcagtacttttctgttaactc-aaaacaatattctaca |
124 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||| |
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| T |
33621424 |
atactataacataaatttctgcacagtcaaaaacaataggagtaatatttagaatatacaa-tcagtacttttcttttaactcaaaaacagtattctaca |
33621522 |
T |
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| Q |
125 |
aatgtcacatcttgagatgaactaaaactcatggcatgagcatgagtgccgccttcaaagttagttat |
192 |
Q |
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| T |
33621523 |
aatgtcacatc-tgagatgaactaaaactcatg------gcatgagtgccgcctccaaagttagttat |
33621583 |
T |
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