View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_373 (Length: 202)
Name: NF8521A_low_373
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_373 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 29467308 - 29467152
Alignment:
| Q |
18 |
gcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcg |
117 |
Q |
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| T |
29467308 |
gcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcg |
29467209 |
T |
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| Q |
118 |
ttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
174 |
Q |
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| T |
29467208 |
ttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
29467152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 29452832 - 29452676
Alignment:
| Q |
20 |
agagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
119 |
Q |
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| T |
29452832 |
agagaaggccgttacatgaactgaacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
29452733 |
T |
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| Q |
120 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
176 |
Q |
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| T |
29452732 |
gatttggtagaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttg |
29452676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29423880 - 29424035
Alignment:
| Q |
18 |
gcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcg |
117 |
Q |
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| T |
29423880 |
gcagagaaggccgttacatgatccgaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcg |
29423979 |
T |
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| Q |
118 |
ttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatt |
173 |
Q |
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| T |
29423980 |
ttgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaaggaatt |
29424035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 29442842 - 29442684
Alignment:
| Q |
18 |
gcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcg |
117 |
Q |
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| T |
29442842 |
gcagagaaggccgttacatgaacctagaagagacatgcggttgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatct |
29442743 |
T |
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| Q |
118 |
ttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
176 |
Q |
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| T |
29442742 |
tcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttg |
29442684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 14550988 - 14551143
Alignment:
| Q |
20 |
agagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
119 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550988 |
agagaagaccgttacatgaaccgagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
14551087 |
T |
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| Q |
120 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
175 |
Q |
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| T |
14551088 |
gatttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaatttt |
14551143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
| Q |
120 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
175 |
Q |
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||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||| |
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| T |
8572882 |
gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt |
8572827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
| Q |
123 |
ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
175 |
Q |
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| T |
9292699 |
ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt |
9292751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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