View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_374 (Length: 202)
Name: NF8521A_low_374
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_374 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 10707897 - 10707707
Alignment:
| Q |
11 |
caatatgacaagacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaatttca |
110 |
Q |
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| T |
10707897 |
caatatgacaagacaaaaatactcttaagtattt-atatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaattcca |
10707799 |
T |
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| Q |
111 |
atttcatggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttagtgtttac |
202 |
Q |
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| T |
10707798 |
atttcatggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgtttac |
10707707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 10694201 - 10694105
Alignment:
| Q |
21 |
agacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaatttcaatttcat |
117 |
Q |
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| T |
10694201 |
agacaaaaatactcttaagtattttatatagtttcaatttcatagctccactaaataaaaagaaccactagctagtagtttcaaatttcaatttcat |
10694105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 10694037 - 10693950
Alignment:
| Q |
106 |
tttcaatttcatggctgatcgtgtggtaagaccaa---ggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgtt |
190 |
Q |
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| T |
10694037 |
tttcaatttcatggctgatcatgttgtaagaccaacaagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgagtgtt |
10693950 |
T |
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